This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Methanobacteriota
Anticodon = ACG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.535858 (13 seq.)
>WENV170659290
JXWR01002956
[JXWR] soil metagenome; rice field; ambient CO2
4077
4149
+
Arg
ACG
[ENA]
¡û
>WENV170659547
JXWR01009618
[JXWR] soil metagenome; rice field; ambient CO2
6858
6930
+
Arg
ACG
[ENA]
¡û
>WENV170659586
JXWR01011046
[JXWR] soil metagenome; rice field; ambient CO2
360
432
+
Arg
ACG
[ENA]
¡û
>WENV170659612
JXWR01014325
[JXWR] soil metagenome; rice field; ambient CO2
773
845
+
Arg
ACG
[ENA]
¡û
>WENV170668489
LAFL01003525
[LAFL] hot springs metagenome; hot springs water enriched for viruses sample NL10_1002_vDNA_WGA
1
73
+
Arg
ACG
[ENA]
¡û
>W2011579060
SGXU01000744
Methanobacteriota
Halorubrum sp. SP9 [SGXU]
99
171
+
Arg
ACG
[ENA]
¡û
>SC0100042
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
620038
619966
-
Arg
ACG
[ENA]
¡û
>SC0100055
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
492419
492347
-
Arg
ACG
[ENA]
¡û
>SC0100138
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
490611
490683
+
Arg
ACG
[ENA]
¡û
>SC0100146
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
374356
374428
+
Arg
ACG
[ENA]
¡û
>SC0100195
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
340372
340300
-
Arg
ACG
[ENA]
¡û
>W1610158750
FAMN01001435
Bacillota
Clostridioides difficile [FAMN]
121
193
+
Arg
ACG
[ENA]
¡û
>W1710160417
FAMN01001435
Bacillota
Clostridioides difficile [FAMN]
121
193
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK