This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Methanobacteriota
Anticodon = CAT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268485 (1 seq.)
>PL201001304
CP058532
Methanobacteriota
Halobonum sp. Gai3-2 plasmid:unnamed3 [CP058532]
55162
55240
+
Met
CAT
[ENA]
¡û
Identical group No.272376 (107 seq.)
>A171001117
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
892048
892123
+
Met
CAT
-
¡û
>A171001135
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
3060109
3060183
+
Met
CAT
-
¡û
>A171001311
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
2562827
2562752
-
Met
CAT
-
¡û
>A171003084
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
787692
787767
+
Met
CAT
-
¡û
>A171003170
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
3307514
3307590
+
Met
CAT
-
¡û
>A171003184
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
1511757
1511683
-
Met
CAT
-
¡û
>A171003503
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
552747
552671
-
Met
CAT
-
¡û
>A171004158
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
648674
648598
-
Met
CAT
-
¡û
>A171006947
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
249021
249096
+
Met
CAT
-
¡û
>WENV180588679
OCOP01150095
[OCOP] marine metagenome; water
108
183
+
fMet
CAT
[ENA]
¡û
>WENV181404227
OGBZ01005487
[OGBZ] sediment metagenome; hot spring sediment
661
736
+
fMet
CAT
[ENA]
¡û
>PL191000885
CP031306
Euryarchaeota
Natronorubrum bangense JCM 10635 plasmid:unnamed1 (CP031306)
461302
461378
+
Met
CAT
[ENA]
¡û
>W1910006901
BBMP01000007
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
344979
344904
-
Met
CAT
[ENA]
¡û
>W1910226706
FMZP01000013
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
35916
35991
+
Met
CAT
[ENA]
¡û
>W1910226913
FNFE01000002
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
511534
511459
-
Met
CAT
[ENA]
¡û
>W1910229308
FNWL01000001
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
822245
822169
-
Met
CAT
[ENA]
¡û
>W1910229920
FOIC01000015
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
46966
46891
-
Met
CAT
[ENA]
¡û
>W1910230449
FORO01000017
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
64931
65006
+
Met
CAT
[ENA]
¡û
>W1910230862
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
581807
581731
-
Met
CAT
[ENA]
¡û
>W1910340488
FTNP01000001
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
803266
803191
-
Met
CAT
[ENA]
¡û
>W1910568565
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
780254
780179
-
Met
CAT
[ENA]
¡û
>W1910572571
JMIP02000018
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
75720
75796
+
Met
CAT
[ENA]
¡û
>W1910572582
JMIP02000025
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
91205
91281
+
Met
CAT
[ENA]
¡û
>W1910572718
JNCS01000006
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
115489
115413
-
Met
CAT
[ENA]
¡û
>W1910583017
JXAN01000056
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
20844
20920
+
Met
CAT
[ENA]
¡û
>W1910657576
MASN01000043
Euryarchaeota
Natrialba sp. SSL1 [MASN]
32764
32840
+
Met
CAT
[ENA]
¡û
>W1911433971
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
484239
484315
+
Met
CAT
[ENA]
¡û
>W1911572244
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
656389
656314
-
Met
CAT
[ENA]
¡û
>W1911591333
PKKI01000016
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
65326
65401
+
Met
CAT
[ENA]
¡û
>W1911709982
QPND01000008
Euryarchaeota
Saliphagus sp. LR7 [QPND]
160789
160713
-
Met
CAT
[ENA]
¡û
>W1911717986
QQTY01000002
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
299911
299987
+
Met
CAT
[ENA]
¡û
>PL201000678
CP045490
Methanobacteriota
Natronorubrum aibiense 7-3 plasmid:unnamed2 [CP045490]
30592
30517
-
fMet
CAT
[ENA]
¡û
>A211000736
CP069188
Methanobacteriota
Haloterrigena salifodinae BOL5-1 [CP069188]
2762348
2762272
-
fMet
CAT
-
¡û
>A211000747
CP069188
Methanobacteriota
Haloterrigena salifodinae BOL5-1 [CP069188]
967803
967728
-
fMet
CAT
-
¡û
>A211000920
CP071463
Methanobacteriota
Haloterrigena longa ABH32 [CP071463]
830895
830820
-
fMet
CAT
-
¡û
>A211001447
CP082249
Methanobacteriota
Natrinema sp. SYSU A 869 [CP082249]
1378231
1378306
+
fMet
CAT
-
¡û
>A241001531
CP031305
Methanobacteriota
Natronorubrum bangense JCM 10635 [CP031305]
629315
629240
-
iMet
CAT
-
¡û
>A241002948
CP059154
Methanobacteriota
Natrinema zhouii YPL30 [CP059154]
3554376
3554301
-
iMet
CAT
-
¡û
>C231431692
CP100762
Methanobacteriota
Natribaculum sp. AD-4 [CP100762]
53116
53190
+
fMet
CAT
-
¡û
>W2010075259
BBMP01000007
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
344979
344904
-
fMet
CAT
[ENA]
¡û
>W2010381274
FMZP01000013
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
35916
35991
+
fMet
CAT
[ENA]
¡û
>W2010381481
FNFE01000002
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
511534
511459
-
fMet
CAT
[ENA]
¡û
>W2010383284
FNWL01000001
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
822245
822169
-
fMet
CAT
[ENA]
¡û
>W2010383896
FOIC01000015
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
46966
46891
-
fMet
CAT
[ENA]
¡û
>W2010384425
FORO01000017
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
64931
65006
+
fMet
CAT
[ENA]
¡û
>W2010384838
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
581807
581731
-
fMet
CAT
[ENA]
¡û
>W2010397118
FTNP01000001
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
803266
803191
-
fMet
CAT
[ENA]
¡û
>W2010528958
JAAOHU010000002
Methanobacteriota
Halostella sp. JP-L12 [JAAOHU]
62188
62113
-
fMet
CAT
[ENA]
¡û
>W2010575357
JAAVUO010000001
Methanobacteriota
Natronococcus sp. JC468 [JAAVUO]
215093
215018
-
fMet
CAT
[ENA]
¡û
>W2010636454
JABUQZ010000001
Methanobacteriota
Haloterrigena sp. SYSU A558-1 [JABUQZ]
2575234
2575159
-
fMet
CAT
[ENA]
¡û
>W2010636471
JABUQZ010000001
Methanobacteriota
Haloterrigena sp. SYSU A558-1 [JABUQZ]
127309
127233
-
fMet
CAT
[ENA]
¡û
>W2010636483
JABURA010000001
Methanobacteriota
Haloterrigena sp. SYSU A121-1 [JABURA]
1677809
1677885
+
fMet
CAT
[ENA]
¡û
>W2010636500
JABURA010000001
Methanobacteriota
Haloterrigena sp. SYSU A121-1 [JABURA]
4047642
4047718
+
fMet
CAT
[ENA]
¡û
>W2010753566
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
780254
780179
-
fMet
CAT
[ENA]
¡û
>W2010758304
JMIP02000018
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
75720
75796
+
fMet
CAT
[ENA]
¡û
>W2010758315
JMIP02000025
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
91205
91281
+
fMet
CAT
[ENA]
¡û
>W2010758451
JNCS01000006
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
115489
115413
-
fMet
CAT
[ENA]
¡û
>W2010762718
JXAN01000056
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
20844
20920
+
fMet
CAT
[ENA]
¡û
>W2010804445
MASN01000043
Euryarchaeota
Natrialba sp. SSL1 [MASN]
32764
32840
+
fMet
CAT
[ENA]
¡û
>W2011146114
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
484239
484315
+
fMet
CAT
[ENA]
¡û
>W2011182665
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
656389
656314
-
fMet
CAT
[ENA]
¡û
>W2011196759
PKKI01000016
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
65326
65401
+
fMet
CAT
[ENA]
¡û
>W2011284087
QPND01000008
Euryarchaeota
Saliphagus sp. LR7 [QPND]
160789
160713
-
fMet
CAT
[ENA]
¡û
>W2011286031
QQTY01000002
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
299911
299987
+
fMet
CAT
[ENA]
¡û
>W2011393591
RCDI01000002
Methanobacteriota
Halostella sp. LT12 [RCDI]
62188
62113
-
fMet
CAT
[ENA]
¡û
>W2011398205
RCIH01000005
Methanobacteriota
Halostella salina CBA1114 [RCIH]
96933
96857
-
fMet
CAT
[ENA]
¡û
>W2011413524
REFZ01000001
Methanobacteriota
Natrialbaceae haloarchaeon AArcht7 [REFZ]
244058
244134
+
fMet
CAT
[ENA]
¡û
>W2011413565
REGA01000001
Methanobacteriota
Natrialbaceae haloarchaeon AArcht4 AArcht4T [REGA]
290312
290387
+
fMet
CAT
[ENA]
¡û
>W2011481692
RQWN01000001
Methanobacteriota
Haloterrigena sp. ZY19 [RQWN]
1106574
1106650
+
fMet
CAT
[ENA]
¡û
>W2011481705
RQWN01000002
Methanobacteriota
Haloterrigena sp. ZY19 [RQWN]
383389
383465
+
fMet
CAT
[ENA]
¡û
>W2011498391
RXOB02000024
Methanobacteriota
Halorussus amylolyticus YC93 [RXOB]
35933
36008
+
fMet
CAT
[ENA]
¡û
>W2011581640
SHMR01000009
Methanobacteriota
Natrinema altunense 4.1R [SHMR]
115441
115365
-
fMet
CAT
[ENA]
¡û
>W2011604565
SJER01000002
Methanobacteriota
Halostella sp. DLLS-108 [SJER]
312255
312331
+
fMet
CAT
[ENA]
¡û
>W2011604606
SJES01000001
Methanobacteriota
Halostella sp. LYG-109 [SJES]
105995
105920
-
fMet
CAT
[ENA]
¡û
>W2011751111
SZNO01000002
Methanobacteriota
halophilic archaeon NEN6 [SZNO]
107868
107944
+
fMet
CAT
[ENA]
¡û
>W2012136789
VTAW01000036
Methanobacteriota
Natrialba sp. ESP3B_9 [VTAW]
26261
26336
+
fMet
CAT
[ENA]
¡û
>W2012440327
WUBV01000046
Methanobacteriota
Natrialba sp. INN-245 [WUBV]
29053
29128
+
fMet
CAT
[ENA]
¡û
>W2012450193
WUYX01000008
Methanobacteriota
Natronorubrum sp. JWXQ-INN-674 [WUYX]
18528
18452
-
fMet
CAT
[ENA]
¡û
>W1610001038
ACIT01000001
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
696214
696139
-
Pseudo
CAT
[ENA]
¡û
>W1610004080
AGIM01000002
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
9885
9810
-
Pseudo
CAT
[ENA]
¡û
>W1610005362
AJVG01000002
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
48723
48649
-
Pseudo
CAT
[ENA]
¡û
>W1610005363
AJVG01000003
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
188110
188186
+
Pseudo
CAT
[ENA]
¡û
>W1610011718
AOHS01000029
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
160755
160830
+
Pseudo
CAT
[ENA]
¡û
>W1610011905
AOHW01000022
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
272310
272386
+
Pseudo
CAT
[ENA]
¡û
>W1610012003
AOHY01000034
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
213641
213716
+
Pseudo
CAT
[ENA]
¡û
>W1610012006
AOHY01000039
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
124870
124794
-
Pseudo
CAT
[ENA]
¡û
>W1610012100
AOIA01000165
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
1091
1166
+
Pseudo
CAT
[ENA]
¡û
>W1610012112
AOIB01000013
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
209970
210045
+
Pseudo
CAT
[ENA]
¡û
>W1610012188
AOIC01000122
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
9973
9898
-
Pseudo
CAT
[ENA]
¡û
>W1610012194
AOID01000005
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
162055
161980
-
Pseudo
CAT
[ENA]
¡û
>W1610012209
AOID01000029
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
62109
62183
+
Pseudo
CAT
[ENA]
¡û
>W1610012300
AOII01000066
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
42634
42560
-
Pseudo
CAT
[ENA]
¡û
>W1610012310
AOII01000081
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
42696
42620
-
Pseudo
CAT
[ENA]
¡û
>W1610012333
AOIJ01000039
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
5818
5744
-
Pseudo
CAT
[ENA]
¡û
>W1610012360
AOIJ01000061
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
172879
172803
-
Pseudo
CAT
[ENA]
¡û
>W1610012373
AOIK01000008
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
20120
20196
+
Pseudo
CAT
[ENA]
¡û
>W1610012425
AOIL01000029
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
60236
60160
-
Pseudo
CAT
[ENA]
¡û
>W1610012487
AOIM01000038
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
57443
57518
+
Pseudo
CAT
[ENA]
¡û
>W1610012532
AOIN01000093
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
39456
39380
-
Pseudo
CAT
[ENA]
¡û
>W1610012562
AOIO01000031
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
107635
107711
+
Pseudo
CAT
[ENA]
¡û
>W1610012591
AOIP01000015
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
1415
1491
+
Pseudo
CAT
[ENA]
¡û
>W1610012725
AOIS01000030
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
115946
115872
-
Pseudo
CAT
[ENA]
¡û
>W1610012743
AOIS01000063
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
4785
4860
+
Pseudo
CAT
[ENA]
¡û
>W1610014547
AOMC01000091
Euryarchaeota
Halococcus morrhuae DSM 1307 [AOMC]
45286
45211
-
Pseudo
CAT
[ENA]
¡û
>W1610014683
AOMF01000163
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
53598
53522
-
Pseudo
CAT
[ENA]
¡û
>W1610019008
ARPH01000002
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
561116
561040
-
Pseudo
CAT
[ENA]
¡û
>W1610671390
LKCV01000296
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
290
215
-
Pseudo
CAT
[ENA]
¡û
Identical group No.287156 (5 seq.)
>PL201001224
CP054709
Methanobacteriota
Halarchaeum sp. CBA1220 plasmid:pCBA1220-02 [CP054709]
190155
190231
+
fMet
CAT
[ENA]
¡û
>PL201001225
CP054710
Methanobacteriota
Halarchaeum sp. CBA1220 plasmid:pCBA1220-03 [CP054710]
97831
97907
+
fMet
CAT
[ENA]
¡û
>W2011430960
RIZB01000003
Methanobacteriota
Halarchaeum sp. CBA1220 [RIZB]
113450
113526
+
fMet
CAT
[ENA]
¡û
>W2011430961
RIZB01000003
Methanobacteriota
Halarchaeum sp. CBA1220 [RIZB]
358238
358314
+
fMet
CAT
[ENA]
¡û
>W2011430962
RIZB01000004
Methanobacteriota
Halarchaeum sp. CBA1220 [RIZB]
887
963
+
fMet
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK