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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Methanobacteriota
Anticodon = TGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287155 (1 seq.)
>PL203000156
CP058532
Methanobacteriota
Halobonum sp. Gai3-2 plasmid:unnamed3 [CP058532]
53677
53751
+
Ala
TGC
[ENA]
¡û
Identical group No.746575 (41 seq.)
>A171000017
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1865199
1865274
+
Ala
TGC
-
¡û
>A171003753
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
1165646
1165573
-
Ala
TGC
-
¡û
>A171004163
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
192947
193022
+
Ala
TGC
-
¡û
>A171007428
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
35799
35874
+
Ala
TGC
-
¡û
>At0813
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1877083
1877154
+
Ala
TGC
[Ensembl]
¡û
>At1710
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
214367
214296
-
Ala
TGC
[Ensembl]
¡û
>W1911709987
QPND01000009
Euryarchaeota
Saliphagus sp. LR7 [QPND]
37682
37609
-
Ala
TGC
[ENA]
¡û
>PL201001223
CP054708
Methanobacteriota
Halarchaeum sp. CBA1220 plasmid:pCBA1220-01 [CP054708]
528010
527937
-
Ala
TGC
[ENA]
¡û
>A211000771
CP070332
Methanobacteriota
Halobacterium sp. BOL4-2 [CP070332]
1839056
1839131
+
Ala
TGC
-
¡û
>A211000811
CP070377
Methanobacteriota
Halobacterium sp. GSL-19 [CP070377]
1852474
1852549
+
Ala
TGC
-
¡û
>A211001419
CP081958
Methanobacteriota
Halobaculum magnesiiphilum NBRC 109044 [CP081958]
1783986
1784059
+
Ala
TGC
-
¡û
>A211001512
CP082284
Methanobacteriota
Halobaculum sp. C46 [CP082284]
1349103
1349030
-
Ala
TGC
-
¡û
>A211001544
CP082286
Methanobacteriota
Halobaculum roseum CGMCC 1.15501 [CP082286]
1737457
1737530
+
Ala
TGC
-
¡û
>A241002651
CP054707
Methanobacteriota
Halarchaeum sp. CBA1220 [CP054707]
706839
706766
-
Ala
TGC
-
¡û
>A241002733
CP058334
Methanobacteriota
Natronomonas halophila C90 [CP058334]
1530517
1530446
-
Ala
TGC
-
¡û
>A241002765
CP058335
Methanobacteriota
Natronomonas salina YPL13 [CP058335]
2244699
2244628
-
Ala
TGC
-
¡û
>C231431708
CP100762
Methanobacteriota
Natribaculum sp. AD-4 [CP100762]
2619620
2619694
+
Ala
TGC
-
¡û
>W2010156110
CAAHFB010000001
Methanobacteriota
Halorhabdus rudnickae [CAAHFB]
2045517
2045590
+
Ala
TGC
[ENA]
¡û
>W2010525390
JAANTH010000001
Methanobacteriota
Halobacterium sp. R2-5 [JAANTH]
292459
292534
+
Ala
TGC
[ENA]
¡û
>W2010529427
JAAOIR010000001
Methanobacteriota
Halorubellus sp. JP-L1 [JAAOIR]
901
974
+
Ala
TGC
[ENA]
¡û
>W2010660109
JACAWU010000001
Methanobacteriota
Natronomonas gomsonensis YCN60 [JACAWU]
462709
462638
-
Ala
TGC
[ENA]
¡û
>W2010701838
JACHGX010000002
Methanobacteriota
Halobacterium salinarum DSM 669 [JACHGX]
144403
144328
-
Ala
TGC
[ENA]
¡û
>W2011262608
QKNX01000003
Methanobacteriota
Natronomonas sp. F20-122 [QKNX]
210782
210711
-
Ala
TGC
[ENA]
¡û
>W2011284092
QPND01000009
Euryarchaeota
Saliphagus sp. LR7 [QPND]
37682
37609
-
Ala
TGC
[ENA]
¡û
>W2011430920
RIZB01000001
Methanobacteriota
Halarchaeum sp. CBA1220 [RIZB]
615742
615815
+
Ala
TGC
[ENA]
¡û
>W2011430959
RIZB01000002
Methanobacteriota
Halarchaeum sp. CBA1220 [RIZB]
418430
418357
-
Ala
TGC
[ENA]
¡û
>W2011498401
RXOB02000054
Methanobacteriota
Halorussus amylolyticus YC93 [RXOB]
1162
1089
-
Ala
TGC
[ENA]
¡û
>W2011673670
SPQG01000013
Methanobacteriota
Halorhabdus sp. H27 [SPQG]
62138
62065
-
Ala
TGC
[ENA]
¡û
>W2012127733
VRYN01000001
Methanobacteriota
Halobacterium salinarum DSM 3754 [VRYN]
795100
795175
+
Ala
TGC
[ENA]
¡û
>W2012409932
WPCC01000005
Methanobacteriota
Natronomonas sp. CBA1123 [WPCC]
19138
19067
-
Ala
TGC
[ENA]
¡û
>W2012410050
WPCF01000008
Methanobacteriota
Halobacterium sp. CBA1126 [WPCF]
19055
19130
+
Ala
TGC
[ENA]
¡û
>W2012447246
WUUS01000020
Methanobacteriota
Halobaculum sp. WSA2 [WUUS]
1194
1121
-
Ala
TGC
[ENA]
¡û
>W1610004190
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
318693
318618
-
Ala
TGC
[ENA]
¡û
>W1610061870
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
2566738
2566813
+
Ala
TGC
[ENA]
¡û
>W1610085068
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
1299560
1299635
+
Ala
TGC
[ENA]
¡û
>W1610085133
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
160080
160005
-
Ala
TGC
[ENA]
¡û
>W1610085172
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
202281
202206
-
Ala
TGC
[ENA]
¡û
>W1610085211
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
201896
201821
-
Ala
TGC
[ENA]
¡û
>W1610085234
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
2356884
2356959
+
Ala
TGC
[ENA]
¡û
>W1610085267
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
1299644
1299719
+
Ala
TGC
[ENA]
¡û
>W1610085316
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
2313488
2313563
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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