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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Minisyncoccota
Anticodon = CAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86126 (4 seq.)
>W1910716725
MFWS01000020
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
6231
6145
-
Leu
CAA
[ENA]
¡û
>W1910716749
MFWU01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
7103
7189
+
Leu
CAA
[ENA]
¡û
>W2010850151
MFWS01000020
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
6231
6145
-
Leu
CAA
[ENA]
¡û
>W2010850175
MFWU01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
7103
7189
+
Leu
CAA
[ENA]
¡û
Identical group No.179556 (6 seq.)
>WENV183691235
ORMF011725230
[ORMF] groundwater metagenome; groundwater
218
301
+
Leu
CAA
[ENA]
¡û
>W1910716665
MFWQ01000004
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
1185
1270
+
Leu
CAA
[ENA]
¡û
>W2010850091
MFWQ01000004
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
1185
1270
+
Leu
CAA
[ENA]
¡û
>W1511613594
LCKN01000003
Unclassified
Microgenomates group bacterium GW2011_GWB1_45_17 GW2011_GWB1_45_17 [LCKN]
30003
29920
-
Leu
CAA
[ENA]
¡û
>W1511614609
LCLW01000001
Unclassified
Microgenomates group bacterium GW2011_GWA1_46_15 GW2011_GWA1_46_15 [LCLW]
42785
42868
+
Leu
CAA
[ENA]
¡û
>W1511614658
LCLX01000002
Unclassified
Microgenomates group bacterium GW2011_GWC1_46_15 GW2011_GWC1_46_15 [LCLX]
107035
107118
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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