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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Minisyncoccota
Anticodon = CAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.136070 (5 seq.)
>W1910716659
MFWQ01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
19274
19358
+
Leu
CAG
[ENA]
¡û
>W2010850085
MFWQ01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
19274
19358
+
Leu
CAG
[ENA]
¡û
>W1511613630
LCKN01000017
Unclassified
Microgenomates group bacterium GW2011_GWB1_45_17 GW2011_GWB1_45_17 [LCKN]
1731
1645
-
Leu
CAG
[ENA]
¡û
>W1511614637
LCLW01000016
Unclassified
Microgenomates group bacterium GW2011_GWA1_46_15 GW2011_GWA1_46_15 [LCLW]
17821
17735
-
Leu
CAG
[ENA]
¡û
>W1511614662
LCLX01000002
Unclassified
Microgenomates group bacterium GW2011_GWC1_46_15 GW2011_GWC1_46_15 [LCLX]
18077
17991
-
Leu
CAG
[ENA]
¡û
Identical group No.249098 (6 seq.)
>W1910716696
MFWR01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
51016
50935
-
Leu
CAG
[ENA]
¡û
>W1910716733
MFWS01000030
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
8748
8829
+
Leu
CAG
[ENA]
¡û
>W1910716762
MFWU01000008
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
51008
50927
-
Leu
CAG
[ENA]
¡û
>W2010850122
MFWR01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
51016
50935
-
Leu
CAG
[ENA]
¡û
>W2010850159
MFWS01000030
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
8748
8829
+
Leu
CAG
[ENA]
¡û
>W2010850188
MFWU01000008
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
51008
50927
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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