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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Minisyncoccota
Anticodon = CGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.344912 (6 seq.)
>W1910716709
MFWR01000009
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
13993
13919
-
Pro
CGG
[ENA]
¡û
>W1910716722
MFWS01000018
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
2341
2415
+
Pro
CGG
[ENA]
¡û
>W1910716768
MFWU01000009
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
90191
90265
+
Pro
CGG
[ENA]
¡û
>W2010850135
MFWR01000009
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
13993
13919
-
Pro
CGG
[ENA]
¡û
>W2010850148
MFWS01000018
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
2341
2415
+
Pro
CGG
[ENA]
¡û
>W2010850194
MFWU01000009
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
90191
90265
+
Pro
CGG
[ENA]
¡û
Identical group No.550468 (5 seq.)
>W1910716674
MFWQ01000022
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
3945
4018
+
Pro
CGG
[ENA]
¡û
>W2010850100
MFWQ01000022
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
3945
4018
+
Pro
CGG
[ENA]
¡û
>W1511613600
LCKN01000006
Unclassified
Microgenomates group bacterium GW2011_GWB1_45_17 GW2011_GWB1_45_17 [LCKN]
55997
56072
+
Pro
CGG
[ENA]
¡û
>W1511614645
LCLW01000017
Unclassified
Microgenomates group bacterium GW2011_GWA1_46_15 GW2011_GWA1_46_15 [LCLW]
4554
4629
+
Pro
CGG
[ENA]
¡û
>W1511614676
LCLX01000003
Unclassified
Microgenomates group bacterium GW2011_GWC1_46_15 GW2011_GWC1_46_15 [LCLX]
5538
5463
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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