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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Minisyncoccota
Anticodon = CTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.344909 (6 seq.)
>W1910716693
MFWR01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
51881
51955
+
Lys
CTT
[ENA]
¡û
>W1910716739
MFWS01000030
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
7883
7809
-
Lys
CTT
[ENA]
¡û
>W1910716759
MFWU01000008
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
51873
51947
+
Lys
CTT
[ENA]
¡û
>W2010850119
MFWR01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
51881
51955
+
Lys
CTT
[ENA]
¡û
>W2010850165
MFWS01000030
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
7883
7809
-
Lys
CTT
[ENA]
¡û
>W2010850185
MFWU01000008
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
51873
51947
+
Lys
CTT
[ENA]
¡û
Identical group No.756668 (5 seq.)
>W1910716663
MFWQ01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
12402
12330
-
Lys
CTT
[ENA]
¡û
>W2010850089
MFWQ01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
12402
12330
-
Lys
CTT
[ENA]
¡û
>W1511613592
LCKN01000003
Unclassified
Microgenomates group bacterium GW2011_GWB1_45_17 GW2011_GWB1_45_17 [LCKN]
106110
106036
-
Lys
CTT
[ENA]
¡û
>W1511614629
LCLW01000009
Unclassified
Microgenomates group bacterium GW2011_GWA1_46_15 GW2011_GWA1_46_15 [LCLW]
6693
6619
-
Lys
CTT
[ENA]
¡û
>W1511614656
LCLX01000002
Unclassified
Microgenomates group bacterium GW2011_GWC1_46_15 GW2011_GWC1_46_15 [LCLX]
30727
30801
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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