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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Minisyncoccota
Anticodon = GAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.535441 (8 seq.)
>W1711403836
MFWX01000002
Unclassified
Candidatus Pacebacteria bacterium RIFOXYB1_FULL_44_10 [MFWX]
112916
112841
-
Phe
GAA
[ENA]
¡û
>W1910716661
MFWQ01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
20840
20913
+
Phe
GAA
[ENA]
¡û
>W2010850087
MFWQ01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
20840
20913
+
Phe
GAA
[ENA]
¡û
>W1511611155
LCHI01000003
Unclassified
Microgenomates group bacterium GW2011_GWF1_44_10 GW2011_GWF1_44_10 [LCHI]
64462
64537
+
Phe
GAA
[ENA]
¡û
>W1511613623
LCKN01000015
Unclassified
Microgenomates group bacterium GW2011_GWB1_45_17 GW2011_GWB1_45_17 [LCKN]
15943
15870
-
Phe
GAA
[ENA]
¡û
>W1511613761
LCKR01000001
Unclassified
Microgenomates group bacterium GW2011_GWF2_45_18 GW2011_GWF2_45_18 [LCKR]
189374
189299
-
Phe
GAA
[ENA]
¡û
>W1511614639
LCLW01000016
Unclassified
Microgenomates group bacterium GW2011_GWA1_46_15 GW2011_GWA1_46_15 [LCLW]
15742
15669
-
Phe
GAA
[ENA]
¡û
>W1511614664
LCLX01000002
Unclassified
Microgenomates group bacterium GW2011_GWC1_46_15 GW2011_GWC1_46_15 [LCLX]
15998
15925
-
Phe
GAA
[ENA]
¡û
Identical group No.550470 (6 seq.)
>W1910716699
MFWR01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
50732
50659
-
Phe
GAA
[ENA]
¡û
>W1910716736
MFWS01000030
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
9032
9105
+
Phe
GAA
[ENA]
¡û
>W1910716765
MFWU01000008
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
50724
50651
-
Phe
GAA
[ENA]
¡û
>W2010850125
MFWR01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
50732
50659
-
Phe
GAA
[ENA]
¡û
>W2010850162
MFWS01000030
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
9032
9105
+
Phe
GAA
[ENA]
¡û
>W2010850191
MFWU01000008
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
50724
50651
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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