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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Minisyncoccota
Anticodon = TAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58861 (5 seq.)
>W1910716664
MFWQ01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
4626
4539
-
Leu
TAG
[ENA]
¡û
>W2010850090
MFWQ01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
4626
4539
-
Leu
TAG
[ENA]
¡û
>W1511613593
LCKN01000003
Unclassified
Microgenomates group bacterium GW2011_GWB1_45_17 GW2011_GWB1_45_17 [LCKN]
95431
95344
-
Leu
TAG
[ENA]
¡û
>W1511614635
LCLW01000013
Unclassified
Microgenomates group bacterium GW2011_GWA1_46_15 GW2011_GWA1_46_15 [LCLW]
3821
3908
+
Leu
TAG
[ENA]
¡û
>W1511614657
LCLX01000002
Unclassified
Microgenomates group bacterium GW2011_GWC1_46_15 GW2011_GWC1_46_15 [LCLX]
41406
41493
+
Leu
TAG
[ENA]
¡û
Identical group No.104379 (6 seq.)
>W1910716695
MFWR01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
61590
61505
-
Leu
TAG
[ENA]
¡û
>W1910716721
MFWS01000017
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
1544
1459
-
Leu
TAG
[ENA]
¡û
>W1910716761
MFWU01000008
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
61582
61497
-
Leu
TAG
[ENA]
¡û
>W2010850121
MFWR01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
61590
61505
-
Leu
TAG
[ENA]
¡û
>W2010850147
MFWS01000017
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
1544
1459
-
Leu
TAG
[ENA]
¡û
>W2010850187
MFWU01000008
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
61582
61497
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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