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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Minisyncoccota
Anticodon = TTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.878229 (10 seq.)
>W1711403776
MFWV01000007
Unclassified
Candidatus Pacebacteria bacterium RIFOXYA1_FULL_38_18 [MFWV]
115555
115484
-
Gln
TTG
[ENA]
¡û
>W1711403809
MFWW01000005
Unclassified
Candidatus Pacebacteria bacterium RIFOXYB1_FULL_39_46 [MFWW]
194417
194346
-
Gln
TTG
[ENA]
¡û
>W1711403893
MFWY01000009
Unclassified
Candidatus Pacebacteria bacterium RIFOXYC1_FULL_39_21 [MFWY]
177886
177815
-
Gln
TTG
[ENA]
¡û
>W1711403921
MFWZ01000006
Unclassified
Candidatus Pacebacteria bacterium RIFOXYD1_FULL_39_27 [MFWZ]
115542
115471
-
Gln
TTG
[ENA]
¡û
>W1910716691
MFWR01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
45490
45561
+
Gln
TTG
[ENA]
¡û
>W1910716730
MFWS01000026
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
45333
45404
+
Gln
TTG
[ENA]
¡û
>W1910716757
MFWU01000008
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
45482
45553
+
Gln
TTG
[ENA]
¡û
>W2010850117
MFWR01000003
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_16 [MFWR]
45490
45561
+
Gln
TTG
[ENA]
¡û
>W2010850156
MFWS01000026
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_02_FULL_46_9 [MFWS]
45333
45404
+
Gln
TTG
[ENA]
¡û
>W2010850183
MFWU01000008
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPLOWO2_01_FULL_47_12 [MFWU]
45482
45553
+
Gln
TTG
[ENA]
¡û
Identical group No.882136 (2 seq.)
>W1910716676
MFWQ01000025
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
2874
2945
+
Gln
TTG
[ENA]
¡û
>W2010850102
MFWQ01000025
Minisyncoccota
Candidatus Pacebacteria bacterium RIFCSPHIGHO2_01_FULL_46_10 [MFWQ]
2874
2945
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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