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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mycoplasmatota
Anticodon = CAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.132834 (2 seq.)
>W1711137642
LVBR01000049
Mycoplasmatota
Acholeplasmatales bacterium Tener_01 [LVBR]
4236
4150
-
Leu
CAG
[ENA]
¡û
>W1610948762
LVBR01000049
Mycoplasmatota
Acholeplasmatales bacterium Tener_01 [LVBR]
4236
4150
-
Leu
CAG
[ENA]
¡û
Identical group No.134040 (7 seq.)
>WENV170563602
CZCB01022579
[CZCB] anaerobic digester metagenome; anaerobic digester
2274
2188
-
Leu
CAG
[ENA]
¡û
>WENV170689638
LFRM01304955
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
6051
5965
-
Leu
CAG
[ENA]
¡û
>WENV170720175
LSQX01144026
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
180
94
-
Leu
CAG
[ENA]
¡û
>W1610605266
LFRT01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
6051
5965
-
Leu
CAG
[ENA]
¡û
>W1610605429
LFRY01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
6051
5965
-
Leu
CAG
[ENA]
¡û
>W1710726586
LFRT01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
6051
5965
-
Leu
CAG
[ENA]
¡û
>W1710726716
LFRY01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
6051
5965
-
Leu
CAG
[ENA]
¡û
Identical group No.209506 (2 seq.)
>W1711137650
LVBS01000001
Mycoplasmatota
Entomoplasmatales bacterium Tener_02 [LVBS]
1854
1770
-
Leu
CAG
[ENA]
¡û
>W1610948770
LVBS01000001
Mycoplasmatota
Entomoplasmatales bacterium Tener_02 [LVBS]
1854
1770
-
Leu
CAG
[ENA]
¡û
Identical group No.259318 (13 seq.)
>W1711423274
MICP01000061
Mycoplasmatota
Tenericutes bacterium GWA2_35_7 [MICP]
6741
6659
-
Leu
CAG
[ENA]
¡û
>W1711423342
MICR01000011
Mycoplasmatota
Tenericutes bacterium GWC2_34_14 [MICR]
70847
70765
-
Leu
CAG
[ENA]
¡û
>W1711423424
MICU01000013
Mycoplasmatota
Tenericutes bacterium GWE2_34_108 [MICU]
70875
70793
-
Leu
CAG
[ENA]
¡û
>W1711423458
MICW01000006
Mycoplasmatota
Tenericutes bacterium GWF1_35_14 [MICW]
70826
70744
-
Leu
CAG
[ENA]
¡û
>W1711423518
MICX01000014
Mycoplasmatota
Tenericutes bacterium GWF2_35_184 [MICX]
70875
70793
-
Leu
CAG
[ENA]
¡û
>W1711423590
MIDA01000098
Mycoplasmatota
Tenericutes bacterium RIFOXYA12_FULL_35_10 [MIDA]
14736
14654
-
Leu
CAG
[ENA]
¡û
>W1711423598
MIDB01000005
Mycoplasmatota
Tenericutes bacterium RIFOXYA2_FULL_36_32 [MIDB]
86584
86666
+
Leu
CAG
[ENA]
¡û
>W1711423645
MIDC01000010
Mycoplasmatota
Tenericutes bacterium RIFOXYB2_FULL_36_25 [MIDC]
70862
70780
-
Leu
CAG
[ENA]
¡û
>W1711423673
MIDD01000005
Mycoplasmatota
Tenericutes bacterium RIFOXYC2_FULL_35_27 [MIDD]
70867
70785
-
Leu
CAG
[ENA]
¡û
>W1711423723
MIDE01000026
Mycoplasmatota
Tenericutes bacterium RIFOXYD12_FULL_36_9 [MIDE]
43516
43434
-
Leu
CAG
[ENA]
¡û
>W1711423763
MIDF01000027
Mycoplasmatota
Tenericutes bacterium RIFOXYD2_FULL_35_11 [MIDF]
70808
70726
-
Leu
CAG
[ENA]
¡û
>WENV181230782
OFEK01003374
[OFEK] activated sludge metagenome; Anaerobic digester
828
746
-
Leu
CAG
[ENA]
¡û
>WENV170656703
JTFO01035786
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1403
1485
+
Leu
CAG
[ENA]
¡û
Identical group No.261451 (2 seq.)
>W1711423438
MICV01000028
Mycoplasmatota
Tenericutes bacterium GWE2_38_8 [MICV]
18164
18082
-
Leu
CAG
[ENA]
¡û
>WENV170643240
JFJP01052090
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2702
2784
+
Leu
CAG
[ENA]
¡û
Identical group No.262420 (1 seq.)
>C211077347
CP048914
Mycoplasmatota
Firmicutes bacterium zrk13 [CP048914]
1422757
1422839
+
Leu
CAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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