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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mycoplasmatota
Anticodon = CCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.750483 (7 seq.)
>WENV170563321
CZCB01014484
[CZCB] anaerobic digester metagenome; anaerobic digester
1627
1553
-
Gly
CCC
[ENA]
¡û
>WENV170686250
LFRM01135346
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7352
7426
+
Gly
CCC
[ENA]
¡û
>WENV170722809
LSQX01243758
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9119
9045
-
Gly
CCC
[ENA]
¡û
>W1610605252
LFRT01000025
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
7352
7426
+
Gly
CCC
[ENA]
¡û
>W1610605415
LFRY01000025
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
7352
7426
+
Gly
CCC
[ENA]
¡û
>W1710726572
LFRT01000025
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
7352
7426
+
Gly
CCC
[ENA]
¡û
>W1710726702
LFRY01000025
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
7352
7426
+
Gly
CCC
[ENA]
¡û
Identical group No.783566 (2 seq.)
>W1711423541
MICZ01000027
Mycoplasmatota
Tenericutes bacterium GWF2_57_13 [MICZ]
98356
98282
-
Gly
CCC
[ENA]
¡û
>WENV170609820
FUWD011508338
[FUWD] metagenome; unknown
107
181
+
Gly
CCC
[ENA]
¡û
Identical group No.902397 (1 seq.)
>C123000261
CP003731
Mycoplasmatota
Candidatus Mycoplasma haematolamae str. Purdue [CP003731]
27721
27794
+
Gly
CCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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