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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mycoplasmatota
Anticodon = CCG
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8538 (1 seq.)
>C181199938
CP031376
Mycoplasmatota
Spiroplasma alleghenense PLHS-1 [CP031376]
225550
225454
-
SeC
CCG
-
¡û
Identical group No.275500 (11 seq.)
>W1711423276
MICP01000073
Mycoplasmatota
Tenericutes bacterium GWA2_35_7 [MICP]
358
281
-
Arg
CCG
[ENA]
¡û
>W1711423340
MICR01000009
Mycoplasmatota
Tenericutes bacterium GWC2_34_14 [MICR]
364
287
-
Arg
CCG
[ENA]
¡û
>W1711423418
MICU01000008
Mycoplasmatota
Tenericutes bacterium GWE2_34_108 [MICU]
73731
73808
+
Arg
CCG
[ENA]
¡û
>W1711423455
MICW01000003
Mycoplasmatota
Tenericutes bacterium GWF1_35_14 [MICW]
73723
73800
+
Arg
CCG
[ENA]
¡û
>W1711423516
MICX01000010
Mycoplasmatota
Tenericutes bacterium GWF2_35_184 [MICX]
362
285
-
Arg
CCG
[ENA]
¡û
>W1711423586
MIDA01000074
Mycoplasmatota
Tenericutes bacterium RIFOXYA12_FULL_35_10 [MIDA]
337
260
-
Arg
CCG
[ENA]
¡û
>W1711423596
MIDB01000002
Mycoplasmatota
Tenericutes bacterium RIFOXYA2_FULL_36_32 [MIDB]
355
278
-
Arg
CCG
[ENA]
¡û
>W1711423643
MIDC01000005
Mycoplasmatota
Tenericutes bacterium RIFOXYB2_FULL_36_25 [MIDC]
361
284
-
Arg
CCG
[ENA]
¡û
>W1711423671
MIDD01000002
Mycoplasmatota
Tenericutes bacterium RIFOXYC2_FULL_35_27 [MIDD]
293
216
-
Arg
CCG
[ENA]
¡û
>W1711423742
MIDE01000049
Mycoplasmatota
Tenericutes bacterium RIFOXYD12_FULL_36_9 [MIDE]
323
246
-
Arg
CCG
[ENA]
¡û
>W1711423766
MIDF01000030
Mycoplasmatota
Tenericutes bacterium RIFOXYD2_FULL_35_11 [MIDF]
302
225
-
Arg
CCG
[ENA]
¡û
Identical group No.275501 (1 seq.)
>W1711423520
MICY01000019
Mycoplasmatota
Tenericutes bacterium GWF2_38_8 [MICY]
3326
3249
-
Arg
CCG
[ENA]
¡û
Identical group No.277219 (2 seq.)
>W131221400
AUAL01000006
Mycoplasmatota
Haploplasma axanthum ATCC 25176 [AUAL]
30558
30633
+
Arg
CCG
[ENA]
¡û
>C191218807
LR215048
Mycoplasmatota
Haploplasma axanthum NCTC10138 [LR215048]
937177
937252
+
Arg
CCG
-
¡û
Identical group No.287353 (1 seq.)
>C211341252
CP076021
Mycoplasmatota
Tenericutes bacterium zrk7 [CP076021]
1306426
1306349
-
Arg
CCG
-
¡û
Identical group No.295117 (6 seq.)
>WENV180346251
OBLN01048497
[OBLN] sediment metagenome; sediment
332
255
-
Arg
CCG
[ENA]
¡û
>WENV170635793
JDSH01005532
[JDSH] bioreactor metagenome; continuous culture bioreactor electron acceptor NO2- transfer2; day 38 after inoculation
521
444
-
Arg
CCG
[ENA]
¡û
>WENV170646460
JQGR01008436
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
160
237
+
Arg
CCG
[ENA]
¡û
>C181029198
CP017948
Mycoplasmatota
Tenericutes bacterium MO-XQ [CP017948]
637179
637256
+
Arg
CCG
-
¡û
>W2010144865
BLWL01000002
Mycoplasmatota
Acholeplasmataceae bacterium Mahy22 [BLWL]
115399
115476
+
Arg
CCG
[ENA]
¡û
>C211019637
AP024412
Mycoplasmatota
Acholeplasmataceae bacterium Mahy22 [AP024412]
1290051
1289974
-
Arg
CCG
-
¡û
Identical group No.324379 (19 seq.)
>W1711138210
LVCP01000001
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
186856
186780
-
Arg
CCG
[ENA]
¡û
>W1711229027
LXYB01000006
Mycoplasmatota
Acholeplasma laidlawii [LXYB]
34127
34051
-
Arg
CCG
[ENA]
¡û
>W1711274097
LZGE01000008
Mycoplasmatota
Acholeplasma laidlawii [LZGE]
37152
37076
-
Arg
CCG
[ENA]
¡û
>W1711274128
LZGF01000007
Mycoplasmatota
Acholeplasma laidlawii [LZGF]
34127
34051
-
Arg
CCG
[ENA]
¡û
>C08000450
CP000896
Mycoplasmatota
Acholeplasma laidlawii PG-8A [CP000896]
429859
429935
+
Arg
CCG
[Ensembl]
¡û
>C181213430
LS483439
Mycoplasmatota
Acholeplasma laidlawii NCTC10116 [LS483439]
428439
428515
+
Arg
CCG
-
¡û
>W1910884376
NELN02000001
Mycoplasmatota
Acholeplasma laidlawii PG8RMel [NELN]
388121
388045
-
Arg
CCG
[ENA]
¡û
>W1910884408
NELO02000001
Mycoplasmatota
Acholeplasma laidlawii PG8RTet [NELO]
388121
388045
-
Arg
CCG
[ENA]
¡û
>W1810787469
QRDS01000001
Mycoplasmatota
Acholeplasma laidlawii DSM 23060 [QRDS]
351763
351839
+
Arg
CCG
[ENA]
¡û
>W2010653249
JACAOE010000001
Mycoplasmatota
Acholeplasma laidlawii PG8r1 [JACAOE]
749673
749597
-
Arg
CCG
[ENA]
¡û
>W2010653274
JACAOF010000004
Mycoplasmatota
Acholeplasma laidlawii PG8r3 [JACAOF]
62662
62586
-
Arg
CCG
[ENA]
¡û
>W2010653312
JACAOG010000001
Mycoplasmatota
Acholeplasma laidlawii PG8R10 [JACAOG]
749896
749820
-
Arg
CCG
[ENA]
¡û
>W2010653344
JACAOH010000001
Mycoplasmatota
Acholeplasma laidlawii PG8B [JACAOH]
351571
351647
+
Arg
CCG
[ENA]
¡û
>W2010951127
NELN02000001
Mycoplasmatota
Acholeplasma laidlawii PG8RMel [NELN]
388121
388045
-
Arg
CCG
[ENA]
¡û
>W2010951159
NELO02000001
Mycoplasmatota
Acholeplasma laidlawii PG8RTet [NELO]
388121
388045
-
Arg
CCG
[ENA]
¡û
>W2012070820
VKID01000001
Mycoplasmatota
Acholeplasma laidlawii PG8REry [VKID]
749707
749631
-
Arg
CCG
[ENA]
¡û
>W2110359218
JADNRS010000003
Mycoplasmatota
Acholeplasma laidlawii QMP CG1-1743 [JADNRS]
22789
22865
+
Arg
CCG
[ENA]
¡û
>C231482297
CP103951
Mycoplasmatota
Acholeplasma laidlawii JS42 [CP103951]
439604
439680
+
Arg
CCG
-
¡û
>W1610949296
LVCP01000001
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
186856
186780
-
Arg
CCG
[ENA]
¡û
Identical group No.327947 (1 seq.)
>W2110500602
JAFIDC010000001
Mycoplasmatota
Acholeplasma equirhinis N93 [JAFIDC]
792646
792572
-
Arg
CCG
[ENA]
¡û
Identical group No.402286 (1 seq.)
>W1711423547
MICZ01000035
Mycoplasmatota
Tenericutes bacterium GWF2_57_13 [MICZ]
13968
14044
+
Arg
CCG
[ENA]
¡û
Identical group No.450164 (1 seq.)
>C211077361
CP048914
Mycoplasmatota
Firmicutes bacterium zrk13 [CP048914]
89021
88945
-
Arg
CCG
-
¡û
Identical group No.450175 (1 seq.)
>C211085847
CP051151
Mycoplasmatota
Tenericutes bacterium zrk29 [CP051151]
441597
441521
-
Arg
CCG
-
¡û
Identical group No.451459 (1 seq.)
>C241268880
CP126461
Mycoplasmatota
Acholeplasma laidlawii 8195 [CP126461]
428527
428603
+
Arg
CCG
-
¡û
Identical group No.484954 (1 seq.)
>C211341237
CP076020
Mycoplasmatota
Tenericutes bacterium zrk2 [CP076020]
822115
822039
-
Arg
CCG
-
¡û
Identical group No.486628 (1 seq.)
>C181029247
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
747929
747853
-
Arg
CCG
-
¡û
Identical group No.488003 (1 seq.)
>W141278626
JAFR01000006
Mycoplasmatota
Acholeplasma granularum ATCC 19168 [JAFR]
197726
197802
+
Arg
CCG
[ENA]
¡û
Identical group No.501386 (1 seq.)
>W141560618
JHXT01000003
Mycoplasmatota
[Mycoplasma] testudinis ATCC 43263 [JHXT]
68784
68708
-
Arg
CCG
[ENA]
¡û
Identical group No.547974 (1 seq.)
>C141012107
FO681347
Mycoplasmatota
Alteracholeplasma palmae J233 [FO681347]
670557
670632
+
Arg
CCG
[Ensembl]
¡û
Identical group No.618224 (1 seq.)
>C211332168
CP074573
Mycoplasmatota
Tenericutes bacterium zrk4 [CP074573]
2330978
2331053
+
Arg
CCG
-
¡û
Identical group No.699645 (2 seq.)
>W1911245750
NSKI01000001
Mycoplasmatota
Inordinaticella fortuita 4B [NSKI]
143572
143497
-
Arg
CCG
[ENA]
¡û
>W2011070651
NSKI01000001
Mycoplasmatota
Inordinaticella fortuita 4B [NSKI]
143572
143497
-
Arg
CCG
[ENA]
¡û
Identical group No.750484 (10 seq.)
>WENV170563044
CZCB01009163
[CZCB] anaerobic digester metagenome; anaerobic digester
12223
12297
+
Arg
CCG
[ENA]
¡û
>WENV170687239
LFRM01184521
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
243
169
-
Arg
CCG
[ENA]
¡û
>WENV170689998
LFRM01320862
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
336
410
+
Arg
CCG
[ENA]
¡û
>WENV170716534
LSQX01002533
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
132
58
-
Arg
CCG
[ENA]
¡û
>WENV170719706
LSQX01123666
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
253
327
+
Arg
CCG
[ENA]
¡û
>WENV170969454
MTKW01029348
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
278
352
+
Arg
CCG
[ENA]
¡û
>W1610605258
LFRT01000037
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
243
169
-
Arg
CCG
[ENA]
¡û
>W1610605421
LFRY01000037
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
243
169
-
Arg
CCG
[ENA]
¡û
>W1710726578
LFRT01000037
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
243
169
-
Arg
CCG
[ENA]
¡û
>W1710726708
LFRY01000037
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
243
169
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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