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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mycoplasmatota
Anticodon = CGG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275794 (5 seq.)
>WENV170687240
LFRM01184521
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
136
59
-
Pro
CGG
[ENA]
¡û
>W1610605259
LFRT01000037
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
136
59
-
Pro
CGG
[ENA]
¡û
>W1610605422
LFRY01000037
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
136
59
-
Pro
CGG
[ENA]
¡û
>W1710726579
LFRT01000037
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
136
59
-
Pro
CGG
[ENA]
¡û
>W1710726709
LFRY01000037
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
136
59
-
Pro
CGG
[ENA]
¡û
Identical group No.330291 (4 seq.)
>W1711137649
LVBS01000001
Mycoplasmatota
Entomoplasmatales bacterium Tener_02 [LVBS]
4496
4422
-
Pro
CGG
[ENA]
¡û
>WENV180676835
OCVV011525367
[OCVV] gut metagenome; gut
7
83
+
Pro
CGG
[ENA]
¡û
>WENV180676836
OCVV011525367
[OCVV] gut metagenome; gut
7
83
+
Pro
CGG
[ENA]
¡û
>W1610948769
LVBS01000001
Mycoplasmatota
Entomoplasmatales bacterium Tener_02 [LVBS]
4496
4422
-
Pro
CGG
[ENA]
¡û
Identical group No.332655 (11 seq.)
>W1711423288
MICP01000106
Mycoplasmatota
Tenericutes bacterium GWA2_35_7 [MICP]
13813
13889
+
Pro
CGG
[ENA]
¡û
>W1711423344
MICR01000012
Mycoplasmatota
Tenericutes bacterium GWC2_34_14 [MICR]
378552
378628
+
Pro
CGG
[ENA]
¡û
>W1711423423
MICU01000012
Mycoplasmatota
Tenericutes bacterium GWE2_34_108 [MICU]
41037
40961
-
Pro
CGG
[ENA]
¡û
>W1711423453
MICW01000002
Mycoplasmatota
Tenericutes bacterium GWF1_35_14 [MICW]
41022
40946
-
Pro
CGG
[ENA]
¡û
>W1711423512
MICX01000009
Mycoplasmatota
Tenericutes bacterium GWF2_35_184 [MICX]
378601
378677
+
Pro
CGG
[ENA]
¡û
>W1711423578
MIDA01000057
Mycoplasmatota
Tenericutes bacterium RIFOXYA12_FULL_35_10 [MIDA]
1398
1322
-
Pro
CGG
[ENA]
¡û
>W1711423599
MIDB01000006
Mycoplasmatota
Tenericutes bacterium RIFOXYA2_FULL_36_32 [MIDB]
9135
9211
+
Pro
CGG
[ENA]
¡û
>W1711423658
MIDC01000021
Mycoplasmatota
Tenericutes bacterium RIFOXYB2_FULL_36_25 [MIDC]
378788
378864
+
Pro
CGG
[ENA]
¡û
>W1711423693
MIDD01000010
Mycoplasmatota
Tenericutes bacterium RIFOXYC2_FULL_35_27 [MIDD]
378781
378857
+
Pro
CGG
[ENA]
¡û
>W1711423724
MIDE01000029
Mycoplasmatota
Tenericutes bacterium RIFOXYD12_FULL_36_9 [MIDE]
63698
63774
+
Pro
CGG
[ENA]
¡û
>W1711423780
MIDF01000035
Mycoplasmatota
Tenericutes bacterium RIFOXYD2_FULL_35_11 [MIDF]
23638
23714
+
Pro
CGG
[ENA]
¡û
Identical group No.332662 (5 seq.)
>W1711423291
MICQ01000007
Mycoplasmatota
Tenericutes bacterium GWA2_38_26 [MICQ]
5794
5868
+
Pro
CGG
[ENA]
¡û
>W1711423365
MICS01000073
Mycoplasmatota
Tenericutes bacterium GWC2_39_45 [MICS]
11068
10994
-
Pro
CGG
[ENA]
¡û
>W1711423387
MICT01000072
Mycoplasmatota
Tenericutes bacterium GWD2_38_27 [MICT]
26244
26318
+
Pro
CGG
[ENA]
¡û
>W1711423443
MICV01000113
Mycoplasmatota
Tenericutes bacterium GWE2_38_8 [MICV]
7584
7510
-
Pro
CGG
[ENA]
¡û
>W1711423529
MICY01000031
Mycoplasmatota
Tenericutes bacterium GWF2_38_8 [MICY]
27572
27646
+
Pro
CGG
[ENA]
¡û
Identical group No.402287 (1 seq.)
>W1711423551
MICZ01000038
Mycoplasmatota
Tenericutes bacterium GWF2_57_13 [MICZ]
17627
17703
+
Pro
CGG
[ENA]
¡û
Identical group No.413020 (4 seq.)
>WENV181208502
OFBB01020137
[OFBB] metagenome; hydrothermal vent
398
474
+
Pro
CGG
[ENA]
¡û
>WENV181208758
OFBC01004116
[OFBC] metagenome; hydrothermal vent
1095
1019
-
Pro
CGG
[ENA]
¡û
>WENV181223881
OFDD01002360
[OFDD] metagenome; hydrothermal vent
360
284
-
Pro
CGG
[ENA]
¡û
>C211077344
CP048914
Mycoplasmatota
Firmicutes bacterium zrk13 [CP048914]
1410007
1410083
+
Pro
CGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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