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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mycoplasmatota
Anticodon = CTC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275569 (20 seq.)
>W1711581441
MNUA01000063
Mycoplasmatota
Mycoplasma sp. CAG:611_25_7 [MNUA]
3305
3382
+
Glu
CTC
[ENA]
¡û
>WENV180335305
OBLG01000004
[OBLG] human gut metagenome; human gut
245374
245451
+
Glu
CTC
[ENA]
¡û
>WENV180545730
OCIU01000053
[OCIU] human gut metagenome; human gut
45844
45921
+
Glu
CTC
[ENA]
¡û
>WENV180863052
ODLF01089469
[ODLF] human metagenome; G_DNA_Buccal mucosa
126
49
-
Glu
CTC
[ENA]
¡û
>WENV181544513
OGIG01000453
[OGIG] metagenome; Human gut stool
1647
1570
-
Glu
CTC
[ENA]
¡û
>WENV181620599
OGMF01000131
[OGMF] metagenome; Human gut stool
49191
49114
-
Glu
CTC
[ENA]
¡û
>WENV181640766
OGNF01000426
[OGNF] metagenome; Human gut stool
43612
43535
-
Glu
CTC
[ENA]
¡û
>WENV181788741
OGRO01003270
[OGRO] human gut metagenome; faeces
2381
2458
+
Glu
CTC
[ENA]
¡û
>WENV181903712
OGXX01002422
[OGXX] human gut metagenome; faeces
2952
2875
-
Glu
CTC
[ENA]
¡û
>WENV181942543
OGYZ01000398
[OGYZ] human gut metagenome; faeces
10087
10164
+
Glu
CTC
[ENA]
¡û
>WENV182011260
OHBM01000275
[OHBM] human gut metagenome; faeces
31603
31526
-
Glu
CTC
[ENA]
¡û
>WENV182398580
OIEN01003831
[OIEN] human gut metagenome; human gut
2673
2750
+
Glu
CTC
[ENA]
¡û
>WENV182638216
OJLA01009551
[OJLA] metagenome; faeces
2276
2353
+
Glu
CTC
[ENA]
¡û
>WENV182650086
OJMG01040152
[OJMG] human gut metagenome; feces
635
712
+
Glu
CTC
[ENA]
¡û
>WENV182660061
OJMM01000017
[OJMM] human gut metagenome; feces
40076
40153
+
Glu
CTC
[ENA]
¡û
>WENV182662626
OJMO01000045
[OJMO] human gut metagenome; feces
53134
53057
-
Glu
CTC
[ENA]
¡û
>WENV183044456
OLGE01001132
[OLGE] human gut metagenome; faeces
18043
18120
+
Glu
CTC
[ENA]
¡û
>WENV183128308
OLNZ01004663
[OLNZ] human gut metagenome; faeces
6603
6680
+
Glu
CTC
[ENA]
¡û
>WENV183312058
OLVO01041337
[OLVO] human gut metagenome; faeces
182
259
+
Glu
CTC
[ENA]
¡û
>WENV183327122
OLWA01000136
[OLWA] human gut metagenome; faeces
48848
48771
-
Glu
CTC
[ENA]
¡û
Identical group No.330286 (2 seq.)
>W1711137641
LVBR01000039
Mycoplasmatota
Acholeplasmatales bacterium Tener_01 [LVBR]
4340
4416
+
Glu
CTC
[ENA]
¡û
>W1610948761
LVBR01000039
Mycoplasmatota
Acholeplasmatales bacterium Tener_01 [LVBR]
4340
4416
+
Glu
CTC
[ENA]
¡û
Identical group No.330292 (2 seq.)
>W1711137652
LVBS01000077
Mycoplasmatota
Entomoplasmatales bacterium Tener_02 [LVBS]
9021
8945
-
Glu
CTC
[ENA]
¡û
>W1610948772
LVBS01000077
Mycoplasmatota
Entomoplasmatales bacterium Tener_02 [LVBS]
9021
8945
-
Glu
CTC
[ENA]
¡û
Identical group No.539930 (7 seq.)
>WENV170563686
CZCB01025251
[CZCB] anaerobic digester metagenome; anaerobic digester
3155
3230
+
Glu
CTC
[ENA]
¡û
>WENV170688260
LFRM01236355
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12212
12137
-
Glu
CTC
[ENA]
¡û
>WENV170716989
LSQX01019616
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7008
7083
+
Glu
CTC
[ENA]
¡û
>W1610605263
LFRT01000052
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
12212
12137
-
Glu
CTC
[ENA]
¡û
>W1610605426
LFRY01000052
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
12212
12137
-
Glu
CTC
[ENA]
¡û
>W1710726583
LFRT01000052
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
12212
12137
-
Glu
CTC
[ENA]
¡û
>W1710726713
LFRY01000052
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
12212
12137
-
Glu
CTC
[ENA]
¡û
Identical group No.548467 (1 seq.)
>C181074150
CP022928
Mycoplasmatota
Candidatus Spiroplasma holothuricola [CP022928, CP022929]
246424
246349
-
Glu
CTC
-
¡û
Identical group No.660054 (4 seq.)
>WENV180669881
OCVV011289812
[OCVV] gut metagenome; gut
93
168
+
Glu
CTC
[ENA]
¡û
>WENV180669882
OCVV011289812
[OCVV] gut metagenome; gut
93
168
+
Glu
CTC
[ENA]
¡û
>W1911767539
QXEV01000022
Mycoplasmatota
Anaeroplasma bactoclasticum ATCC 27112 [QXEV]
6804
6729
-
Glu
CTC
[ENA]
¡û
>W2011325277
QXEV01000022
Mycoplasmatota
Anaeroplasma bactoclasticum ATCC 27112 [QXEV]
6804
6729
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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