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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mycoplasmatota
Anticodon = CTG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.537325 (18 seq.)
>W1711581440
MNUA01000063
Mycoplasmatota
Mycoplasma sp. CAG:611_25_7 [MNUA]
1476
1551
+
Gln
CTG
[ENA]
¡û
>WENV181620598
OGMF01000131
[OGMF] metagenome; Human gut stool
51009
50934
-
Gln
CTG
[ENA]
¡û
>WENV181640765
OGNF01000426
[OGNF] metagenome; Human gut stool
45430
45355
-
Gln
CTG
[ENA]
¡û
>WENV181675865
OGOP01015058
[OGOP] human gut metagenome; faeces
409
484
+
Gln
CTG
[ENA]
¡û
>WENV181687462
OGOX01001522
[OGOX] human gut metagenome; faeces
2710
2635
-
Gln
CTG
[ENA]
¡û
>WENV181788740
OGRO01003270
[OGRO] human gut metagenome; faeces
563
638
+
Gln
CTG
[ENA]
¡û
>WENV181903711
OGXX01002422
[OGXX] human gut metagenome; faeces
4770
4695
-
Gln
CTG
[ENA]
¡û
>WENV181942542
OGYZ01000398
[OGYZ] human gut metagenome; faeces
8269
8344
+
Gln
CTG
[ENA]
¡û
>WENV182417415
OIGD01020209
[OIGD] human gut metagenome; human gut
39
114
+
Gln
CTG
[ENA]
¡û
>WENV182638215
OJLA01009551
[OJLA] metagenome; faeces
458
533
+
Gln
CTG
[ENA]
¡û
>WENV182650121
OJMG01043984
[OJMG] human gut metagenome; feces
646
571
-
Gln
CTG
[ENA]
¡û
>WENV182660060
OJMM01000017
[OJMM] human gut metagenome; feces
38258
38333
+
Gln
CTG
[ENA]
¡û
>WENV182662625
OJMO01000045
[OJMO] human gut metagenome; feces
54952
54877
-
Gln
CTG
[ENA]
¡û
>WENV183044455
OLGE01001132
[OLGE] human gut metagenome; faeces
16225
16300
+
Gln
CTG
[ENA]
¡û
>WENV183279937
OLSB01001405
[OLSB] human gut metagenome; faeces
18811
18886
+
Gln
CTG
[ENA]
¡û
>WENV183311844
OLVO01021312
[OLVO] human gut metagenome; faeces
1891
1816
-
Gln
CTG
[ENA]
¡û
>WENV183362662
OLXK01017821
[OLXK] human gut metagenome; feces
1527
1452
-
Gln
CTG
[ENA]
¡û
>WENV183566000
OOBZ01076293
[OOBZ] human gut metagenome; human gut
309
234
-
Gln
CTG
[ENA]
¡û
Identical group No.750481 (6 seq.)
>WENV170684005
LFRM01014377
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
32371
32297
-
Gln
CTG
[ENA]
¡û
>WENV170719262
LSQX01107640
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
32462
32388
-
Gln
CTG
[ENA]
¡û
>W1610605245
LFRT01000002
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
32371
32297
-
Gln
CTG
[ENA]
¡û
>W1610605408
LFRY01000002
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
32371
32297
-
Gln
CTG
[ENA]
¡û
>W1710726565
LFRT01000002
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
32371
32297
-
Gln
CTG
[ENA]
¡û
>W1710726695
LFRY01000002
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
32371
32297
-
Gln
CTG
[ENA]
¡û
Identical group No.755166 (1 seq.)
>C181074136
CP022928
Mycoplasmatota
Candidatus Spiroplasma holothuricola [CP022928, CP022929]
176362
176436
+
Gln
CTG
-
¡û
Identical group No.826991 (4 seq.)
>WENV180665889
OCVV011198378
[OCVV] gut metagenome; gut
1628
1702
+
Gln
CTG
[ENA]
¡û
>WENV180665890
OCVV011198378
[OCVV] gut metagenome; gut
1628
1702
+
Gln
CTG
[ENA]
¡û
>W1911767536
QXEV01000008
Mycoplasmatota
Anaeroplasma bactoclasticum ATCC 27112 [QXEV]
15776
15850
+
Gln
CTG
[ENA]
¡û
>W2011325274
QXEV01000008
Mycoplasmatota
Anaeroplasma bactoclasticum ATCC 27112 [QXEV]
15776
15850
+
Gln
CTG
[ENA]
¡û
Identical group No.829384 (1 seq.)
>W2110457610
JAFBBG010000016
Mycoplasmatota
Acholeplasma morum ATCC 33211 [JAFBBG]
20219
20146
-
Gln
CTG
[ENA]
¡û
Identical group No.878698 (12 seq.)
>W1711423269
MICP01000024
Mycoplasmatota
Tenericutes bacterium GWA2_35_7 [MICP]
7987
8060
+
Gln
CTG
[ENA]
¡û
>W1711423318
MICR01000001
Mycoplasmatota
Tenericutes bacterium GWC2_34_14 [MICR]
72859
72786
-
Gln
CTG
[ENA]
¡û
>W1711423398
MICU01000001
Mycoplasmatota
Tenericutes bacterium GWE2_34_108 [MICU]
72864
72791
-
Gln
CTG
[ENA]
¡û
>W1711423448
MICW01000001
Mycoplasmatota
Tenericutes bacterium GWF1_35_14 [MICW]
391774
391847
+
Gln
CTG
[ENA]
¡û
>W1711423486
MICX01000001
Mycoplasmatota
Tenericutes bacterium GWF2_35_184 [MICX]
72865
72792
-
Gln
CTG
[ENA]
¡û
>W1711423582
MIDA01000065
Mycoplasmatota
Tenericutes bacterium RIFOXYA12_FULL_35_10 [MIDA]
11218
11145
-
Gln
CTG
[ENA]
¡û
>W1711423608
MIDB01000011
Mycoplasmatota
Tenericutes bacterium RIFOXYA2_FULL_36_32 [MIDB]
391777
391850
+
Gln
CTG
[ENA]
¡û
>W1711423655
MIDC01000016
Mycoplasmatota
Tenericutes bacterium RIFOXYB2_FULL_36_25 [MIDC]
72822
72749
-
Gln
CTG
[ENA]
¡û
>W1711423679
MIDD01000007
Mycoplasmatota
Tenericutes bacterium RIFOXYC2_FULL_35_27 [MIDD]
72849
72776
-
Gln
CTG
[ENA]
¡û
>W1711423716
MIDE01000018
Mycoplasmatota
Tenericutes bacterium RIFOXYD12_FULL_36_9 [MIDE]
55
128
+
Gln
CTG
[ENA]
¡û
>W1711423746
MIDF01000007
Mycoplasmatota
Tenericutes bacterium RIFOXYD2_FULL_35_11 [MIDF]
84414
84487
+
Gln
CTG
[ENA]
¡û
>WENV181230943
OFEK01005749
[OFEK] activated sludge metagenome; Anaerobic digester
155
82
-
Gln
CTG
[ENA]
¡û
Identical group No.878703 (4 seq.)
>W1711423295
MICQ01000033
Mycoplasmatota
Tenericutes bacterium GWA2_38_26 [MICQ]
60076
60003
-
Gln
CTG
[ENA]
¡û
>W1711423354
MICS01000008
Mycoplasmatota
Tenericutes bacterium GWC2_39_45 [MICS]
48191
48118
-
Gln
CTG
[ENA]
¡û
>W1711423390
MICT01000072
Mycoplasmatota
Tenericutes bacterium GWD2_38_27 [MICT]
63445
63518
+
Gln
CTG
[ENA]
¡û
>WENV170643060
JFJP01049044
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3208
3281
+
Gln
CTG
[ENA]
¡û
Identical group No.878704 (5 seq.)
>W1711423296
MICQ01000033
Mycoplasmatota
Tenericutes bacterium GWA2_38_26 [MICQ]
53289
53216
-
Gln
CTG
[ENA]
¡û
>W1711423355
MICS01000008
Mycoplasmatota
Tenericutes bacterium GWC2_39_45 [MICS]
41404
41331
-
Gln
CTG
[ENA]
¡û
>W1711423391
MICT01000072
Mycoplasmatota
Tenericutes bacterium GWD2_38_27 [MICT]
70232
70305
+
Gln
CTG
[ENA]
¡û
>W1711423534
MICY01000108
Mycoplasmatota
Tenericutes bacterium GWF2_38_8 [MICY]
5591
5518
-
Gln
CTG
[ENA]
¡û
>WENV170609572
FUWD011435754
[FUWD] metagenome; unknown
6
79
+
Gln
CTG
[ENA]
¡û
Identical group No.901120 (1 seq.)
>W1711423548
MICZ01000037
Mycoplasmatota
Tenericutes bacterium GWF2_57_13 [MICZ]
3404
3477
+
Gln
CTG
[ENA]
¡û
Identical group No.927242 (1 seq.)
>W1711423715
MIDE01000015
Mycoplasmatota
Tenericutes bacterium RIFOXYD12_FULL_36_9 [MIDE]
156
83
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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