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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mycoplasmatota
Anticodon = GAC
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.616391 (3 seq.)
>WENV170690823
LFRM01364078
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
6012
6087
+
Val
GAC
[ENA]
¡û
>W1610605403
LFRX01000053
Mycoplasmatota
Acholeplasmatales bacterium DTU056 [LFRX]
6012
6087
+
Val
GAC
[ENA]
¡û
>W1710726690
LFRX01000053
Mycoplasmatota
Acholeplasmatales bacterium DTU056 [LFRX]
6012
6087
+
Val
GAC
[ENA]
¡û
Identical group No.668093 (1 seq.)
>C211077321
CP048914
Mycoplasmatota
Firmicutes bacterium zrk13 [CP048914]
224720
224795
+
Val
GAC
-
¡û
Identical group No.743416 (20 seq.)
>W1711138212
LVCP01000001
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
139589
139515
-
Val
GAC
[ENA]
¡û
>W1711229003
LXYB01000001
Mycoplasmatota
Acholeplasma laidlawii [LXYB]
479575
479501
-
Val
GAC
[ENA]
¡û
>W1711274094
LZGE01000004
Mycoplasmatota
Acholeplasma laidlawii [LZGE]
135621
135547
-
Val
GAC
[ENA]
¡û
>W1711274125
LZGF01000003
Mycoplasmatota
Acholeplasma laidlawii [LZGF]
129162
129088
-
Val
GAC
[ENA]
¡û
>W1711437764
MIPS01000029
Mycoplasmatota
Acholeplasma laidlawii [MIPS]
6330
6404
+
Val
GAC
[ENA]
¡û
>C08000452
CP000896
Mycoplasmatota
Acholeplasma laidlawii PG-8A [CP000896]
477127
477201
+
Val
GAC
[Ensembl]
¡û
>C181213432
LS483439
Mycoplasmatota
Acholeplasma laidlawii NCTC10116 [LS483439]
475709
475783
+
Val
GAC
-
¡û
>W1910884378
NELN02000001
Mycoplasmatota
Acholeplasma laidlawii PG8RMel [NELN]
340851
340777
-
Val
GAC
[ENA]
¡û
>W1910884410
NELO02000001
Mycoplasmatota
Acholeplasma laidlawii PG8RTet [NELO]
340851
340777
-
Val
GAC
[ENA]
¡û
>W1810787471
QRDS01000001
Mycoplasmatota
Acholeplasma laidlawii DSM 23060 [QRDS]
399033
399107
+
Val
GAC
[ENA]
¡û
>W2010653251
JACAOE010000001
Mycoplasmatota
Acholeplasma laidlawii PG8r1 [JACAOE]
702403
702329
-
Val
GAC
[ENA]
¡û
>W2010653276
JACAOF010000004
Mycoplasmatota
Acholeplasma laidlawii PG8r3 [JACAOF]
15392
15318
-
Val
GAC
[ENA]
¡û
>W2010653314
JACAOG010000001
Mycoplasmatota
Acholeplasma laidlawii PG8R10 [JACAOG]
702626
702552
-
Val
GAC
[ENA]
¡û
>W2010653346
JACAOH010000001
Mycoplasmatota
Acholeplasma laidlawii PG8B [JACAOH]
398841
398915
+
Val
GAC
[ENA]
¡û
>W2010951129
NELN02000001
Mycoplasmatota
Acholeplasma laidlawii PG8RMel [NELN]
340851
340777
-
Val
GAC
[ENA]
¡û
>W2010951161
NELO02000001
Mycoplasmatota
Acholeplasma laidlawii PG8RTet [NELO]
340851
340777
-
Val
GAC
[ENA]
¡û
>W2012070822
VKID01000001
Mycoplasmatota
Acholeplasma laidlawii PG8REry [VKID]
702437
702363
-
Val
GAC
[ENA]
¡û
>W2110359225
JADNRS010000030
Mycoplasmatota
Acholeplasma laidlawii QMP CG1-1743 [JADNRS]
13002
13076
+
Val
GAC
[ENA]
¡û
>C231482299
CP103951
Mycoplasmatota
Acholeplasma laidlawii JS42 [CP103951]
544902
544976
+
Val
GAC
-
¡û
>W1610949298
LVCP01000001
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
139589
139515
-
Val
GAC
[ENA]
¡û
Identical group No.745688 (5 seq.)
>W141278635
JAFR01000010
Mycoplasmatota
Acholeplasma granularum ATCC 19168 [JAFR]
79737
79811
+
Val
GAC
[ENA]
¡û
>C151102181
LK028559
Mycoplasmatota
Acholeplasma oculi [LK028559]
646703
646777
+
Val
GAC
[Ensembl]
¡û
>W2011813383
UFRU01000001
Mycoplasmatota
Acholeplasma oculi NCTC10150 [UFRU]
646421
646495
+
Val
GAC
[ENA]
¡û
>W2110500593
JAFIDC010000001
Mycoplasmatota
Acholeplasma equirhinis N93 [JAFIDC]
309863
309937
+
Val
GAC
[ENA]
¡û
>W1710603795
FUZK01000003
Mycoplasmatota
Acholeplasma oculi [FUZK]
9345
9271
-
Val
GAC
[ENA]
¡û
Identical group No.748733 (11 seq.)
>W1711423346
MICR01000013
Mycoplasmatota
Tenericutes bacterium GWC2_34_14 [MICR]
108207
108133
-
Val
GAC
[ENA]
¡û
>W1711423425
MICU01000014
Mycoplasmatota
Tenericutes bacterium GWE2_34_108 [MICU]
46894
46968
+
Val
GAC
[ENA]
¡û
>W1711423459
MICW01000008
Mycoplasmatota
Tenericutes bacterium GWF1_35_14 [MICW]
46897
46971
+
Val
GAC
[ENA]
¡û
>W1711423500
MICX01000005
Mycoplasmatota
Tenericutes bacterium GWF2_35_184 [MICX]
108206
108132
-
Val
GAC
[ENA]
¡û
>W1711423570
MIDA01000041
Mycoplasmatota
Tenericutes bacterium RIFOXYA12_FULL_35_10 [MIDA]
13941
13867
-
Val
GAC
[ENA]
¡û
>W1711423600
MIDB01000007
Mycoplasmatota
Tenericutes bacterium RIFOXYA2_FULL_36_32 [MIDB]
46893
46967
+
Val
GAC
[ENA]
¡û
>W1711423646
MIDC01000012
Mycoplasmatota
Tenericutes bacterium RIFOXYB2_FULL_36_25 [MIDC]
46873
46947
+
Val
GAC
[ENA]
¡û
>W1711423674
MIDD01000006
Mycoplasmatota
Tenericutes bacterium RIFOXYC2_FULL_35_27 [MIDD]
46857
46931
+
Val
GAC
[ENA]
¡û
>W1711423740
MIDE01000048
Mycoplasmatota
Tenericutes bacterium RIFOXYD12_FULL_36_9 [MIDE]
19823
19897
+
Val
GAC
[ENA]
¡û
>W1711423759
MIDF01000012
Mycoplasmatota
Tenericutes bacterium RIFOXYD2_FULL_35_11 [MIDF]
46827
46901
+
Val
GAC
[ENA]
¡û
>WENV181230077
OFEK01000255
[OFEK] activated sludge metagenome; Anaerobic digester
19296
19370
+
Val
GAC
[ENA]
¡û
Identical group No.748734 (4 seq.)
>W1711423375
MICT01000065
Mycoplasmatota
Tenericutes bacterium GWD2_38_27 [MICT]
493
567
+
Val
GAC
[ENA]
¡û
>W1711423439
MICV01000039
Mycoplasmatota
Tenericutes bacterium GWE2_38_8 [MICV]
621
695
+
Val
GAC
[ENA]
¡û
>W1711423528
MICY01000029
Mycoplasmatota
Tenericutes bacterium GWF2_38_8 [MICY]
1382
1456
+
Val
GAC
[ENA]
¡û
>WENV170641322
JFJP01036936
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
429
355
-
Val
GAC
[ENA]
¡û
Identical group No.750482 (6 seq.)
>WENV170563725
CZCB01026666
[CZCB] anaerobic digester metagenome; anaerobic digester
1001
927
-
Val
GAC
[ENA]
¡û
>WENV170686002
LFRM01121056
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5994
6068
+
Val
GAC
[ENA]
¡û
>W1610605251
LFRT01000021
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
5994
6068
+
Val
GAC
[ENA]
¡û
>W1610605414
LFRY01000021
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
5994
6068
+
Val
GAC
[ENA]
¡û
>W1710726571
LFRT01000021
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
5994
6068
+
Val
GAC
[ENA]
¡û
>W1710726701
LFRY01000021
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
5994
6068
+
Val
GAC
[ENA]
¡û
Identical group No.797332 (1 seq.)
>W1711423542
MICZ01000027
Mycoplasmatota
Tenericutes bacterium GWF2_57_13 [MICZ]
95120
95046
-
Val
GAC
[ENA]
¡û
Identical group No.799474 (1 seq.)
>C211341254
CP076021
Mycoplasmatota
Tenericutes bacterium zrk7 [CP076021]
1245404
1245330
-
Val
GAC
-
¡û
Identical group No.800794 (1 seq.)
>C141012147
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
1252398
1252472
+
Val
GAC
[Ensembl]
¡û
Identical group No.829385 (1 seq.)
>W2110457611
JAFBBG010000019
Mycoplasmatota
Acholeplasma morum ATCC 33211 [JAFBBG]
13170
13244
+
Val
GAC
[ENA]
¡û
Identical group No.831901 (2 seq.)
>W2010144867
BLWL01000002
Mycoplasmatota
Acholeplasmataceae bacterium Mahy22 [BLWL]
151223
151297
+
Val
GAC
[ENA]
¡û
>C211019639
AP024412
Mycoplasmatota
Acholeplasmataceae bacterium Mahy22 [AP024412]
1254227
1254153
-
Val
GAC
-
¡û
Identical group No.831957 (1 seq.)
>C211085824
CP051151
Mycoplasmatota
Tenericutes bacterium zrk29 [CP051151]
1706141
1706215
+
Val
GAC
-
¡û
Identical group No.833157 (2 seq.)
>C181029200
CP017948
Mycoplasmatota
Tenericutes bacterium MO-XQ [CP017948]
743125
743199
+
Val
GAC
-
¡û
>C181029249
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
674848
674774
-
Val
GAC
-
¡û
Identical group No.846209 (1 seq.)
>W141560272
JHXL01000001
Mycoplasmatota
Acholeplasma equifetale ATCC 29724 [JHXL]
41977
42051
+
Val
GAC
[ENA]
¡û
Identical group No.846212 (1 seq.)
>W141560987
JHYB01000002
Mycoplasmatota
Haploplasma modicum ATCC 29102 [JHYB]
53226
53300
+
Val
GAC
[ENA]
¡û
Identical group No.855702 (1 seq.)
>C211341211
CP076020
Mycoplasmatota
Tenericutes bacterium zrk2 [CP076020]
344259
344333
+
Val
GAC
-
¡û
Identical group No.917237 (1 seq.)
>C241268882
CP126461
Mycoplasmatota
Acholeplasma laidlawii 8195 [CP126461]
467758
467831
+
Val
GAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK