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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mycoplasmatota
Anticodon = GGC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.539932 (6 seq.)
>WENV170563603
CZCB01022579
[CZCB] anaerobic digester metagenome; anaerobic digester
2186
2111
-
Ala
GGC
[ENA]
¡û
>WENV170689639
LFRM01304955
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5963
5888
-
Ala
GGC
[ENA]
¡û
>W1610605267
LFRT01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
5963
5888
-
Ala
GGC
[ENA]
¡û
>W1610605430
LFRY01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
5963
5888
-
Ala
GGC
[ENA]
¡û
>W1710726587
LFRT01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
5963
5888
-
Ala
GGC
[ENA]
¡û
>W1710726717
LFRY01000067
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
5963
5888
-
Ala
GGC
[ENA]
¡û
Identical group No.614995 (1 seq.)
>W1711423544
MICZ01000033
Mycoplasmatota
Tenericutes bacterium GWF2_57_13 [MICZ]
5223
5148
-
Ala
GGC
[ENA]
¡û
Identical group No.616390 (3 seq.)
>WENV170690589
LFRM01349340
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1974
1899
-
Ala
GGC
[ENA]
¡û
>W1610605402
LFRX01000049
Mycoplasmatota
Acholeplasmatales bacterium DTU056 [LFRX]
1974
1899
-
Ala
GGC
[ENA]
¡û
>W1710726689
LFRX01000049
Mycoplasmatota
Acholeplasmatales bacterium DTU056 [LFRX]
1974
1899
-
Ala
GGC
[ENA]
¡û
Identical group No.620660 (1 seq.)
>C141012165
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
1177375
1177300
-
Ala
GGC
[Ensembl]
¡û
Identical group No.668098 (1 seq.)
>C211077346
CP048914
Mycoplasmatota
Firmicutes bacterium zrk13 [CP048914]
1422096
1422171
+
Ala
GGC
-
¡û
Identical group No.668107 (1 seq.)
>C211085842
CP051151
Mycoplasmatota
Tenericutes bacterium zrk29 [CP051151]
958756
958681
-
Ala
GGC
-
¡û
Identical group No.707161 (1 seq.)
>C211341232
CP076020
Mycoplasmatota
Tenericutes bacterium zrk2 [CP076020]
1327667
1327592
-
Ala
GGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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