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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mycoplasmatota
Anticodon = GGG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.295567 (2 seq.)
>WENV170704532
LLEK01003049
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
605
682
+
Pro
GGG
[ENA]
¡û
>C181029197
CP017948
Mycoplasmatota
Tenericutes bacterium MO-XQ [CP017948]
633711
633788
+
Pro
GGG
-
¡û
Identical group No.332653 (15 seq.)
>W1711423275
MICP01000073
Mycoplasmatota
Tenericutes bacterium GWA2_35_7 [MICP]
2736
2660
-
Pro
GGG
[ENA]
¡û
>W1711423339
MICR01000009
Mycoplasmatota
Tenericutes bacterium GWC2_34_14 [MICR]
2742
2666
-
Pro
GGG
[ENA]
¡û
>W1711423417
MICU01000008
Mycoplasmatota
Tenericutes bacterium GWE2_34_108 [MICU]
71353
71429
+
Pro
GGG
[ENA]
¡û
>W1711423454
MICW01000003
Mycoplasmatota
Tenericutes bacterium GWF1_35_14 [MICW]
71345
71421
+
Pro
GGG
[ENA]
¡û
>W1711423515
MICX01000010
Mycoplasmatota
Tenericutes bacterium GWF2_35_184 [MICX]
2740
2664
-
Pro
GGG
[ENA]
¡û
>W1711423519
MICY01000019
Mycoplasmatota
Tenericutes bacterium GWF2_38_8 [MICY]
5260
5184
-
Pro
GGG
[ENA]
¡û
>W1711423585
MIDA01000074
Mycoplasmatota
Tenericutes bacterium RIFOXYA12_FULL_35_10 [MIDA]
2715
2639
-
Pro
GGG
[ENA]
¡û
>W1711423595
MIDB01000002
Mycoplasmatota
Tenericutes bacterium RIFOXYA2_FULL_36_32 [MIDB]
2733
2657
-
Pro
GGG
[ENA]
¡û
>W1711423642
MIDC01000005
Mycoplasmatota
Tenericutes bacterium RIFOXYB2_FULL_36_25 [MIDC]
2739
2663
-
Pro
GGG
[ENA]
¡û
>W1711423670
MIDD01000002
Mycoplasmatota
Tenericutes bacterium RIFOXYC2_FULL_35_27 [MIDD]
2671
2595
-
Pro
GGG
[ENA]
¡û
>W1711423741
MIDE01000049
Mycoplasmatota
Tenericutes bacterium RIFOXYD12_FULL_36_9 [MIDE]
2701
2625
-
Pro
GGG
[ENA]
¡û
>W1711423765
MIDF01000030
Mycoplasmatota
Tenericutes bacterium RIFOXYD2_FULL_35_11 [MIDF]
2680
2604
-
Pro
GGG
[ENA]
¡û
>WENV180296596
OBJA01001071
[OBJA] soil metagenome; sediment, water from around vicinity
16491
16567
+
Pro
GGG
[ENA]
¡û
>WENV170604244
FUWD010377882
[FUWD] metagenome; unknown
484
408
-
Pro
GGG
[ENA]
¡û
>WENV170656940
JTFO01063405
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
2388
2312
-
Pro
GGG
[ENA]
¡û
Identical group No.335389 (6 seq.)
>WENV170684481
LFRM01041874
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2525
2449
-
Pro
GGG
[ENA]
¡û
>WENV170723577
LSQX01273907
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11472
11548
+
Pro
GGG
[ENA]
¡û
>W1610605248
LFRT01000010
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
2525
2449
-
Pro
GGG
[ENA]
¡û
>W1610605411
LFRY01000010
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
2525
2449
-
Pro
GGG
[ENA]
¡û
>W1710726568
LFRT01000010
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRT]
2525
2449
-
Pro
GGG
[ENA]
¡û
>W1710726698
LFRY01000010
Mycoplasmatota
Acholeplasmatales bacterium DTU067 [LFRY]
2525
2449
-
Pro
GGG
[ENA]
¡û
Identical group No.402283 (2 seq.)
>W1711423540
MICZ01000027
Mycoplasmatota
Tenericutes bacterium GWF2_57_13 [MICZ]
98508
98432
-
Pro
GGG
[ENA]
¡û
>WENV170007970
AMWB02168477
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
92
168
+
Pro
GGG
[ENA]
¡û
Identical group No.450099 (3 seq.)
>WENV180593147
OCOX01002092
[OCOX] marine metagenome; ENVO:00002010
1506
1430
-
Pro
GGG
[ENA]
¡û
>W2010144864
BLWL01000002
Mycoplasmatota
Acholeplasmataceae bacterium Mahy22 [BLWL]
113749
113825
+
Pro
GGG
[ENA]
¡û
>C211019636
AP024412
Mycoplasmatota
Acholeplasmataceae bacterium Mahy22 [AP024412]
1291701
1291625
-
Pro
GGG
-
¡û
Identical group No.450157 (1 seq.)
>C211077323
CP048914
Mycoplasmatota
Firmicutes bacterium zrk13 [CP048914]
535810
535886
+
Pro
GGG
-
¡û
Identical group No.486627 (1 seq.)
>C181029246
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
749072
748996
-
Pro
GGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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