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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mycoplasmatota
Anticodon = TAT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334821 (4 seq.)
>C11114385
FR773153
Mycoplasmatota
Mycoplasma haemofelis str. Langford 1 [FR773153]
55719
55643
-
Ile
TAT
[Ensembl]
¡û
>C11114410
CP002808
Mycoplasmatota
Mycoplasma haemofelis Ohio2 [CP002808]
55708
55632
-
Ile
TAT
[Ensembl]
¡û
>W11149872
AEVA01000001
Mycoplasmatota
Mycoplasma haemofelis Ohio2 [AEVA]
55708
55632
-
Ile
TAT
[ENA]
¡û
>C121008110
CP003199
Mycoplasmatota
Mycoplasma haemocanis str. Illinois [CP003199]
55652
55576
-
Ile
TAT
[Ensembl]
¡û
Identical group No.339561 (1 seq.)
>C231442335
CP101809
Mycoplasmatota
Mycoplasmoides fastidiosum 4822 [CP101809]
9265
9341
+
Ile
TAT
-
¡û
Identical group No.343072 (1 seq.)
>C013840
AE017308
Mycoplasmatota
Mycoplasma mobile 163K [AE017308]
474653
474577
-
Ile
TAT
[Ensembl]
¡û
Identical group No.547370 (1 seq.)
>C121017945
HE613254
Mycoplasmatota
Candidatus Mycoplasma haemominutum 'Birmingham 1' [HE613254]
245164
245089
-
Ile
TAT
[Ensembl]
¡û
Identical group No.607429 (2 seq.)
>W1810683027
QKVO01000019
Mycoplasmatota
Mycoplasma wenyonii INIFAP02 [QKVO]
4565
4640
+
Ile
TAT
[ENA]
¡û
>C121015233
CP003703
Mycoplasmatota
Mycoplasma wenyonii str. Massachusetts [CP003703]
420607
420532
-
Ile
TAT
[Ensembl]
¡û
Identical group No.620246 (1 seq.)
>C121015511
CP003731
Mycoplasmatota
Candidatus Mycoplasma haematolamae str. Purdue [CP003731]
393185
393110
-
Ile
TAT
[Ensembl]
¡û
Identical group No.620478 (4 seq.)
>W10119657
ADWK01000001
Mycoplasmatota
Mycoplasma suis str. Illinois [ADWK]
398893
398818
-
Ile
TAT
[ENA]
¡û
>C11115145
FQ790233
Mycoplasmatota
Mycoplasma suis KI3806 [FQ790233]
357860
357785
-
Ile
TAT
[Ensembl]
¡û
>C11115169
CP002525
Mycoplasmatota
Mycoplasma suis str. Illinois [CP002525]
398893
398818
-
Ile
TAT
[Ensembl]
¡û
>W11126212
ADWK01000001
Mycoplasmatota
Mycoplasma suis str. Illinois [ADWK]
398893
398818
-
Ile
TAT
[ENA]
¡û
Identical group No.620643 (1 seq.)
>C141010672
CP006935
Mycoplasmatota
Mycoplasma ovis str. Michigan [CP006935]
394652
394577
-
Ile
TAT
[Ensembl]
¡û
Identical group No.663178 (3 seq.)
>W1711193187
LWUJ01000011
Mycoplasmatota
Candidatus Mycoplasma haematobovis haemobos [LWUJ]
172670
172595
-
Ile
TAT
[ENA]
¡û
>W2110077442
CACTIB010000008
Mycoplasmatota
Candidatus Mycoplasma haemohominis neocaledoniensis [CACTIB]
112424
112349
-
Ile
TAT
[ENA]
¡û
>W1610993902
LWUJ01000011
Mycoplasmatota
Candidatus Mycoplasma haematobovis haemobos [LWUJ]
172670
172595
-
Ile
TAT
[ENA]
¡û
Identical group No.708766 (1 seq.)
>C141008284
CP006771
Mycoplasmatota
Mycoplasma parvum str. Indiana [CP006771]
249974
250049
+
Ile
TAT
[Ensembl]
¡û
Identical group No.755167 (1 seq.)
>C181074138
CP022928
Mycoplasmatota
Candidatus Spiroplasma holothuricola [CP022928, CP022929]
209920
209994
+
Ile
TAT
-
¡û
Identical group No.818007 (4 seq.)
>WENV170693920
LGVD01000731
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
65297
65223
-
Ile
TAT
[ENA]
¡û
>WENV170695772
LGVE01169591
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
46531
46457
-
Ile
TAT
[ENA]
¡û
>WENV170696752
LGVF01047636
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
84862
84788
-
Ile
TAT
[ENA]
¡û
>W141829161
JRFF01000053
Mycoplasmatota
Candidatus Izimaplasma bacterium HR2 HR2 [JRFF]
110341
110267
-
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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