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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Myoviridae
Anticodon = ACG
HIT:
37 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236193 (1 seq.)
>PHG14101416
JN882285
Myoviridae
Cronobacter phage vB_CsaM_GAP32 GAP-32 (JN882285)
313536
313612
+
Arg
ACG
[ENA]
¡û
Identical group No.238311 (1 seq.)
>PHG181002071
KU574722
Myoviridae
Pectobacterium phage CBB (KU574722)
310642
310718
+
Arg
ACG
[ENA]
¡û
Identical group No.254342 (1 seq.)
>PHG181006861
MG592456
Myoviridae
Vibrio phage 1.081.O._10N.286.52.C2 (MG592456)
201819
201742
-
Arg
ACG
[ENA]
¡û
Identical group No.259222 (1 seq.)
>PHG183000950
MF403008
Myoviridae
Agrobacterium phage Atu_ph07 (MF403008)
338867
338790
-
Arg
ACG
[ENA]
¡û
Identical group No.262133 (1 seq.)
>PHG181006388
MG018930
Myoviridae
Pseudomonas phage ventosus (MG018930)
11191
11114
-
Arg
ACG
[ENA]
¡û
Identical group No.262274 (1 seq.)
>PHG14100704
HQ615693
Myoviridae
Synechococcus phage S-CRM01 VH-P22 (HQ615693)
149226
149301
+
Arg
ACG
[ENA]
¡û
Identical group No.268368 (1 seq.)
>PHG14102816
KJ409772
Myoviridae
Pseudomonas phage phiPsa374 TahiMoana (KJ409772)
27253
27330
+
Arg
ACG
[ENA]
¡û
Identical group No.271548 (2 seq.)
>PHG14100068
EU710883
Myoviridae
Erwinia phage phiEa21-4 phiSG-JL2 (EU710883)
24911
24987
+
Arg
ACG
[ENA]
¡û
>PHG14100166
FQ482083
Myoviridae
Erwinia phage phiEa104 phi 2 (FQ482083)
24902
24978
+
Arg
ACG
[ENA]
¡û
Identical group No.271558 (1 seq.)
>PHG14100808
HQ728263
Myoviridae
Erwinia phage vB_Eam-MM7 EcoS-CEV2 (HQ728263)
7887
7963
+
Arg
ACG
[ENA]
¡û
Identical group No.318907 (6 seq.)
>PHG181001367
KT001916
Myoviridae
Citrobacter phage Michonne (KT001916)
60006
59930
-
Arg
ACG
[ENA]
¡û
>PHG181001602
KT363872
Myoviridae
Citrobacter phage Mordin (KT363872)
31533
31609
+
Arg
ACG
[ENA]
¡û
>PHG181005018
MF158040
Myoviridae
Shigella phage Sf13 (MF158040)
13097
13021
-
Arg
ACG
[ENA]
¡û
>PHG181005037
MF158041
Myoviridae
Shigella phage Sf15 (MF158041)
68860
68784
-
Arg
ACG
[ENA]
¡û
>PHG181005059
MF158043
Myoviridae
Shigella phage Sf16 (MF158043)
19675
19751
+
Arg
ACG
[ENA]
¡û
>PHG181005251
MF327004
Myoviridae
Shigella phage Sf17 (MF327004)
16215
16291
+
Arg
ACG
[ENA]
¡û
Identical group No.318937 (2 seq.)
>PHG181004304
KY654690
Myoviridae
Citrobacter phage Mijalis (KY654690)
61765
61689
-
Arg
ACG
[ENA]
¡û
>PHG14103083
KM236239
Myoviridae
Citrobacter phage Moogle LIKBL0011 (KM236239)
61765
61689
-
Arg
ACG
[ENA]
¡û
Identical group No.318947 (2 seq.)
>PHG181005079
MF158044
Myoviridae
Shigella phage Sf18 (MF158044)
69596
69672
+
Arg
ACG
[ENA]
¡û
>PHG181005271
MF327005
Myoviridae
Shigella phage Sf19 (MF327005)
16810
16886
+
Arg
ACG
[ENA]
¡û
Identical group No.373414 (2 seq.)
>PHG0100128
AJ630128
Myoviridae
Synechococcus phage S-PM2 phiFZB24 (AJ630128)
119612
119685
+
Arg
ACG
[ENA]
¡û
>PHG181004533
LN828717
Myoviridae
Synechococcus phage S-PM2 (LN828717)
110068
110141
+
Arg
ACG
[ENA]
¡û
Identical group No.397522 (2 seq.)
>PHG181001686
KT454805
Myoviridae
Escherichia phage SUSP1 (KT454805)
88298
88374
+
Arg
ACG
[ENA]
¡û
>PHG181001706
KT454806
Myoviridae
Escherichia phage SUSP2 (KT454806)
86253
86329
+
Arg
ACG
[ENA]
¡û
Identical group No.414280 (1 seq.)
>PHG181002147
KU682439
Myoviridae
Stenotrophomonas phage vB_SmaS-DLP_6 (KU682439)
112740
112816
+
Arg
ACG
[ENA]
¡û
Identical group No.414288 (1 seq.)
>PHG181004264
KY630187
Myoviridae
Serratia phage BF (KY630187)
308761
308835
+
Arg
ACG
[ENA]
¡û
Identical group No.428306 (1 seq.)
>PHG181005231
MF327003
Myoviridae
Shigella phage Sf14 (MF327003)
17321
17397
+
Arg
ACG
[ENA]
¡û
Identical group No.467923 (13 seq.)
>WENV180472288
OBYQ01000180
[OBYQ] human gut metagenome; faeces
17504
17579
+
Arg
ACG
[ENA]
¢þ
>WENV182611460
OJJX01000084
[OJJX] metagenome; faeces
87239
87314
+
Arg
ACG
[ENA]
¢þ
>WENV183770271
PPYE01433188
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1128
1053
-
Arg
ACG
[ENA]
¢þ
>WENV183791958
PPYF01442932
[PPYF] human gut metagenome; stool from patient with Crohn's disease
337
262
-
Arg
ACG
[ENA]
¢þ
>PHG0100049
AF320576
Myoviridae
Salmonella phage FelixO1 URLIE 9 (AF320576)
28168
28243
+
Arg
ACG
[ENA]
¡û
>PHG181000739
KM092515
Myoviridae
Escherichia phage HY02 (KM092515)
28153
28228
+
Arg
ACG
[ENA]
¡û
>PHG181003314
KX405003
Myoviridae
Salmonella phage BPS15Q2 (KX405003)
14474
14549
+
Arg
ACG
[ENA]
¡û
>PHG14100330
GU169904
Myoviridae
Staphylococcus phage SA1 B11 (GU169904)
61048
61123
+
Arg
ACG
[ENA]
¡û
>PHG14100858
JF461087
Myoviridae
Salmonella phage FO1a PAS-1 (JF461087)
28090
28165
+
Arg
ACG
[ENA]
¡û
>PHG14101097
JN225449
Myoviridae
Enterobacteriaphage UAB_Phi87 Sebata (JN225449)
1100
1025
-
Arg
ACG
[ENA]
¡û
>PHG14101957
JX560968
Myoviridae
Escherichia phage EC6 JBD67 (JX560968)
14940
15015
+
Arg
ACG
[ENA]
¡û
>PHG14102051
KC139527
Myoviridae
Salmonella phage FSL SP-010 TN106 (KC139527)
22770
22695
-
Arg
ACG
[ENA]
¡û
>PHG14102070
KC139543
Myoviridae
Salmonella phage FSL SP-012 TN106 (KC139543)
22772
22697
-
Arg
ACG
[ENA]
¡û
Identical group No.477212 (12 seq.)
>WENV182826592
OKCT01000022
[OKCT] human gut metagenome; human gut
73230
73155
-
Arg
ACG
[ENA]
¢þ
>WENV182827491
OKDA01000001
[OKDA] human gut metagenome; human gut
69143
69068
-
Arg
ACG
[ENA]
¢þ
>WENV182837009
OKGB01000001
[OKGB] human gut metagenome; human gut
43119
43194
+
Arg
ACG
[ENA]
¢þ
>WENV182851094
OKLK01000001
[OKLK] human gut metagenome; human gut
31680
31605
-
Arg
ACG
[ENA]
¢þ
>WENV183778381
PPYF01120176
[PPYF] human gut metagenome; stool from patient with Crohn's disease
310
385
+
Arg
ACG
[ENA]
¢þ
>PHG181001025
KP869100
Myoviridae
Escherichia typing phage 1 (KP869100)
12448
12373
-
Arg
ACG
[ENA]
¡û
>PHG181001067
KP869106
Myoviridae
Escherichia coli O157 typing phage 8 (KP869106)
48156
48231
+
Arg
ACG
[ENA]
¡û
>PHG181001089
KP869109
Myoviridae
Escherichia coli O157 typing phage 11 (KP869109)
27336
27411
+
Arg
ACG
[ENA]
¡û
>PHG181001103
KP869110
Myoviridae
Escherichia coli O157 typing phage 12 (KP869110)
86917
86842
-
Arg
ACG
[ENA]
¡û
>PHG181001142
KP869113
Myoviridae
Escherichia coli O157 typing phage 15 (KP869113)
631
556
-
Arg
ACG
[ENA]
¡û
>PHG181001167
KR014248
Myoviridae
Escherichia phage vB_EcoM_AYO145A (KR014248)
29315
29390
+
Arg
ACG
[ENA]
¡û
>PHG14100085
EU877232
Myoviridae
Escherichia phage wV8 N4 (EU877232)
29306
29381
+
Arg
ACG
[ENA]
¡û
Identical group No.480694 (5 seq.)
>PHG181001792
KT919972
Myoviridae
Vibrio phage phi-Grn1 (KT919972)
42524
42449
-
Arg
ACG
[ENA]
¡û
>PHG181001814
KT919973
Myoviridae
Vibrio phage phi-ST2 (KT919973)
103062
102987
-
Arg
ACG
[ENA]
¡û
>PHG14100644
HQ317393
Myoviridae
Vibrio phage nt-1 phiSM (HQ317393)
97510
97435
-
Arg
ACG
[ENA]
¡û
>PHG14101367
JN849462
Myoviridae
Vibriophage phi-pp2 JBD26 (JN849462)
180203
180128
-
Arg
ACG
[ENA]
¡û
>PHG14102006
KC131129
Myoviridae
Vibrio phage VH7D TN106 (KC131129)
115420
115345
-
Arg
ACG
[ENA]
¡û
Identical group No.523500 (1 seq.)
>PHG181000783
KP010413
Myoviridae
Salmonella phage vB_SPuM_SP116 (KP010413)
29758
29833
+
Arg
ACG
[ENA]
¡û
Identical group No.536333 (2 seq.)
>PHG181004716
LT960551
Myoviridae
Yersinia phage fHe-Yen9-04 (LT960551)
312075
312148
+
Arg
ACG
[ENA]
¡û
>PHG181004742
LT960552
Myoviridae
Yersinia phage fHe-Yen9-03 (LT960552)
310004
310077
+
Arg
ACG
[ENA]
¡û
Identical group No.536339 (1 seq.)
>PHG181005996
MF668280
Myoviridae
Mycobacterium phage Phabba (MF668280)
93491
93564
+
Arg
ACG
[ENA]
¡û
Identical group No.553392 (1 seq.)
>PHG0100518
EU826466
Myoviridae
Mycobacterium phage Myrna N4 (EU826466)
94809
94882
+
Arg
ACG
[ENA]
¡û
Identical group No.561452 (3 seq.)
>PHG181006566
MG065664
Myoviridae
Campylobacter phage A132 (MG065664)
2520
2595
+
Arg
ACG
[ENA]
¡û
>PHG181007017
MG646672
Myoviridae
Salmonella phage BPS17L1 (MG646672)
70924
70849
-
Arg
ACG
[ENA]
¡û
>PHG14102509
KF055347
Myoviridae
Escherichia phage JH2 phi47:1 (KF055347)
71625
71550
-
Arg
ACG
[ENA]
¡û
Identical group No.562768 (2 seq.)
>PHG181006714
MG250486
Myoviridae
Raoultella phage Ro1 (MG250486)
86190
86265
+
Arg
ACG
[ENA]
¡û
>PHG14102590
KF550303
Myoviridae
Escherichia phage 4MG QB3 (KF550303)
60769
60694
-
Arg
ACG
[ENA]
¡û
Identical group No.581885 (2 seq.)
>PHG181007498
MG969411
Myoviridae
Salmonella phage GE_vB_MG (MG969411)
25266
25341
+
Arg
ACG
[ENA]
¡û
>PHG14100266
GU070616
Myoviridae
Salmonella phage PVP-SE1 PaP1 (GU070616)
63487
63412
-
Arg
ACG
[ENA]
¡û
Identical group No.593512 (1 seq.)
>PHG14102423
KC954775
Myoviridae
Cronobacter phage S13 phi47:1 (KC954775)
122018
122093
+
Arg
ACG
[ENA]
¡û
Identical group No.621916 (1 seq.)
>PHG0100256
AY283928
Myoviridae
Vibrio phage KVP40 PaP3 (AY283928)
178507
178432
-
Arg
ACG
[ENA]
¡û
Identical group No.646277 (1 seq.)
>PHG181000892
KP671755
Myoviridae
Vibrio phage ValKK3 (KP671755)
198767
198842
+
Arg
ACG
[ENA]
¡û
Identical group No.646305 (1 seq.)
>PHG181007434
MG969404
Myoviridae
Salmonella phage GE_vB_7A (MG969404)
13820
13895
+
Arg
ACG
[ENA]
¡û
Identical group No.658346 (48 seq.)
>PHG0100223
AY129337
Myoviridae
Mycobacterium phage Bxz1 PaP3 (AY129337)
99610
99682
+
Arg
ACG
[ENA]
¡û
>PHG0100454
DQ398053
Myoviridae
Mycobacterium phage Catera Brazil-1 (DQ398053)
95599
95671
+
Arg
ACG
[ENA]
¡û
>PHG0100540
EU826467
Myoviridae
Mycobacterium phage Rizal N4 (EU826467)
95343
95415
+
Arg
ACG
[ENA]
¡û
>PHG0100561
EU826468
Myoviridae
Mycobacterium phage Spud N4 (EU826468)
97021
97093
+
Arg
ACG
[ENA]
¡û
>PHG0100581
EU826469
Myoviridae
Mycobacterium phage ScottMcG N4 (EU826469)
95905
95977
+
Arg
ACG
[ENA]
¡û
>PHG0100603
EU826471
Myoviridae
Mycobacterium phage Cali N4 (EU826471)
97952
98024
+
Arg
ACG
[ENA]
¡û
>PHG181001236
KR080196
Myoviridae
Mycobacterium phage Momo (KR080196)
96155
96227
+
Arg
ACG
[ENA]
¡û
>PHG181001549
KT321476
Myoviridae
Mycobacterium phage Zeenon (KT321476)
97201
97273
+
Arg
ACG
[ENA]
¡û
>PHG181001628
KT365398
Myoviridae
Mycobacterium phage DTDevon (KT365398)
98679
98751
+
Arg
ACG
[ENA]
¡û
>PHG181001649
KT365400
Myoviridae
Mycobacterium phage ErnieJ (KT365400)
95881
95953
+
Arg
ACG
[ENA]
¡û
>PHG181003196
KX369583
Myoviridae
Mycobacterium phage Littleton (KX369583)
97315
97387
+
Arg
ACG
[ENA]
¡û
>PHG181003512
KX721255
Myoviridae
Mycobacterium phage Yucca (KX721255)
97549
97621
+
Arg
ACG
[ENA]
¡û
>PHG181003537
KX721256
Myoviridae
Mycobacterium phage Erdmann (KX721256)
97575
97647
+
Arg
ACG
[ENA]
¡û
>PHG181003599
KX781992
Myoviridae
Mycobacterium phage Gabriel (KX781992)
96172
96244
+
Arg
ACG
[ENA]
¡û
>PHG181003637
KX831080
Myoviridae
Mycobacterium phage Lukilu (KX831080)
97623
97695
+
Arg
ACG
[ENA]
¡û
>PHG181006182
MF919493
Myoviridae
Mycobacterium phage Audrick (MF919493)
96837
96909
+
Arg
ACG
[ENA]
¡û
>PHG181006205
MF919494
Myoviridae
Mycobacterium phage BeanWater (MF919494)
96199
96271
+
Arg
ACG
[ENA]
¡û
>PHG181006229
MF919495
Myoviridae
Mycobacterium phage Bigswole (MF919495)
99183
99255
+
Arg
ACG
[ENA]
¡û
>PHG181006251
MF919499
Myoviridae
Mycobacterium phage Daffodil (MF919499)
96906
96978
+
Arg
ACG
[ENA]
¡û
>PHG181006278
MF919513
Myoviridae
Mycobacterium phage Koguma (MF919513)
95191
95263
+
Arg
ACG
[ENA]
¡û
>PHG181006308
MF919527
Myoviridae
Mycobacterium phage Phox (MF919527)
97819
97891
+
Arg
ACG
[ENA]
¡û
>PHG181007335
MG812493
Myoviridae
Mycobacterium phage NuevoMundo (MG812493)
99529
99601
+
Arg
ACG
[ENA]
¡û
>PHG181007357
MG812494
Myoviridae
Mycobacterium phage Pier (MG812494)
99071
99143
+
Arg
ACG
[ENA]
¡û
>PHG181007383
MG872839
Myoviridae
Mycobacterium phage LifeSavor (MG872839)
97064
97136
+
Arg
ACG
[ENA]
¡û
>PHG181007643
MH051260
Myoviridae
Mycobacterium phage InterFolia (MH051260)
98902
98974
+
Arg
ACG
[ENA]
¡û
>PHG181007667
MH051261
Myoviridae
Mycobacterium phage Tyke (MH051261)
98455
98527
+
Arg
ACG
[ENA]
¡û
>PHG181007688
MH051266
Myoviridae
Mycobacterium phage MikeLiesIn (MH051266)
97789
97861
+
Arg
ACG
[ENA]
¡û
>PHG181007967
MH316561
Myoviridae
Mycobacterium phage Derek (MH316561)
97207
97279
+
Arg
ACG
[ENA]
¡û
>PHG181007993
MH316567
Myoviridae
Mycobacterium phage ParkTD (MH316567)
96903
96975
+
Arg
ACG
[ENA]
¡û
>PHG14100212
GQ303260
Myoviridae
Mycobacterium phage ET08 ATCC 35860-B1 (GQ303260)
96435
96507
+
Arg
ACG
[ENA]
¡û
>PHG14100233
GQ303262
Myoviridae
Mycobacterium phage LRRHood ATCC 35860-B1 (GQ303262)
96613
96685
+
Arg
ACG
[ENA]
¡û
>PHG14100895
JF704096
Myoviridae
Mycobacterium phage Ghost MB56Spyo045 (JF704096)
96858
96930
+
Arg
ACG
[ENA]
¡û
>PHG14100943
JF704116
Myoviridae
Mycobacterium phage Drazdys (JF704116)
97222
97294
+
Arg
ACG
[ENA]
¡û
>PHG14101079
JN204348
Myoviridae
Mycobacterium phage Sebata (JN204348)
98386
98458
+
Arg
ACG
[ENA]
¡û
>PHG14101150
JN412588
Myoviridae
Mycobacterium phage Dandelion (JN412588)
101001
101073
+
Arg
ACG
[ENA]
¡û
>PHG14101171
JN412592
Myoviridae
Mycobacterium phage LinStu Patience (JN412592)
97209
97281
+
Arg
ACG
[ENA]
¡û
>PHG14101249
JN699013
Myoviridae
Mycobacterium phage Pio ThreeOh3D2 (JN699013)
100266
100338
+
Arg
ACG
[ENA]
¡û
>PHG14101271
JN699625
Myoviridae
Mycobacterium phage Wally ThreeOh3D2 (JN699625)
96371
96443
+
Arg
ACG
[ENA]
¡û
>PHG14101292
JN699626
Myoviridae
Mycobacterium phage MoMoMixon (JN699626)
96417
96489
+
Arg
ACG
[ENA]
¡û
>PHG14101313
JN699627
Myoviridae
Mycobacterium phage Nappy (JN699627)
97981
98053
+
Arg
ACG
[ENA]
¡û
>PHG14101608
JQ911768
Myoviridae
Mycobacterium phage Ava3 Lu11 (JQ911768)
96338
96410
+
Arg
ACG
[ENA]
¡û
>PHG14102223
KC691257
Myoviridae
Mycobacterium phage Astraea Gb1 (KC691257)
96246
96318
+
Arg
ACG
[ENA]
¡û
>PHG14102245
KC748968
Myoviridae
Mycobacterium phage Gizmo Gb1 (KC748968)
98933
99005
+
Arg
ACG
[ENA]
¡û
>PHG14102268
KC748970
Myoviridae
Mycobacterium phage ArcherS7 Gb1 (KC748970)
97185
97257
+
Arg
ACG
[ENA]
¡û
>PHG14102451
KF006817
Myoviridae
Mycobacterium phage Breeniome phi47:1 (KF006817)
96198
96270
+
Arg
ACG
[ENA]
¡û
>PHG14102493
KF024734
Myoviridae
Mycobacterium phage Shrimp phi47:1 (KF024734)
97919
97991
+
Arg
ACG
[ENA]
¡û
>PHG14102998
KJ595575
Myoviridae
Mycobacterium phage Willis LMSP-25 (KJ595575)
96802
96874
+
Arg
ACG
[ENA]
¡û
>PHG14103360
KM881426
Myoviridae
Mycobacterium phage ZygoTaiga pEcSw (KM881426)
97822
97894
+
Arg
ACG
[ENA]
¡û
Identical group No.712881 (3 seq.)
>PHG181001479
KT281790
Myoviridae
Mycobacterium phage HyRo (KT281790)
96484
96556
+
Arg
ACG
[ENA]
¡û
>PHG14100875
JF704092
Myoviridae
Mycobacterium phage Alice MB56Spyo045 (JF704092)
95478
95550
+
Arg
ACG
[ENA]
¡û
>PHG14101201
JN624850
Myoviridae
Mycobacterium phage Pleione (JN624850)
97381
97453
+
Arg
ACG
[ENA]
¡û
Identical group No.731950 (1 seq.)
>PHG181003562
KX752698
Myoviridae
Mycobacterium phage Tonenili (KX752698)
101298
101370
+
Arg
ACG
[ENA]
¡û
Identical group No.739268 (1 seq.)
>PHG14101397
JN882284
Myoviridae
Cronobacter phage vB_CsaM_GAP31 JBD26 (JN882284)
90149
90223
+
Arg
ACG
[ENA]
¡û
Identical group No.744259 (2 seq.)
>PHG181004648
LN887844
Myoviridae
Pseudomonas phage VCM (LN887844)
70975
70901
-
Arg
ACG
[ENA]
¡û
>PHG181006157
MF893340
Myoviridae
Pseudomonas phage PPSC2 (MF893340)
95096
95170
+
Arg
ACG
[ENA]
¡û
Identical group No.774996 (1 seq.)
>PHG181003686
KX925554
Myoviridae
Streptomyces phage BRock (KX925554)
98602
98530
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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