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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Myoviridae
Anticodon = GGA
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6533 (2 seq.)
>PHG14101513
JQ691611
Myoviridae
Cronobacter phage CR9 DEC5E (JQ691611)
149208
149302
+
Ser
GGA
[ENA]
¡û
>PHG14101528
JQ691612
Myoviridae
Cronobacter phage CR3 DEC5E (JQ691612)
145443
145537
+
Ser
GGA
[ENA]
¡û
Identical group No.6830 (1 seq.)
>PHG181001576
KT353109
Myoviridae
Cronobacter phage PBES 02 (KT353109)
51579
51673
+
Ser
GGA
[ENA]
¡û
Identical group No.7564 (1 seq.)
>PHG14100697
HQ615693
Myoviridae
Synechococcus phage S-CRM01 VH-P22 (HQ615693)
136667
136760
+
Ser
GGA
[ENA]
¡û
Identical group No.7659 (1 seq.)
>PHG181004260
KY630187
Myoviridae
Serratia phage BF (KY630187)
302319
302411
+
Ser
GGA
[ENA]
¡û
Identical group No.8131 (1 seq.)
>PHG14102403
KC954774
Myoviridae
Cronobacter phage CR8 phi47:1 (KC954774)
145194
145288
+
Ser
GGA
[ENA]
¡û
Identical group No.9776 (2 seq.)
>PHG181004710
LT960551
Myoviridae
Yersinia phage fHe-Yen9-04 (LT960551)
307120
307211
+
Ser
GGA
[ENA]
¡û
>PHG181004736
LT960552
Myoviridae
Yersinia phage fHe-Yen9-03 (LT960552)
304864
304955
+
Ser
GGA
[ENA]
¡û
Identical group No.16318 (1 seq.)
>PHG14102585
KF550303
Myoviridae
Escherichia phage 4MG QB3 (KF550303)
61982
61890
-
Ser
GGA
[ENA]
¡û
Identical group No.17508 (1 seq.)
>PHG14101393
JN882284
Myoviridae
Cronobacter phage vB_CsaM_GAP31 JBD26 (JN882284)
89077
89169
+
Ser
GGA
[ENA]
¡û
Identical group No.19890 (1 seq.)
>PHG14101862
JX181824
Myoviridae
Salmonella phage SSE121 SSE-121 (JX181824)
2596
2687
+
Ser
GGA
[ENA]
¡û
Identical group No.24721 (2 seq.)
>PHG181001281
KR296684
Myoviridae
Salmonella phage 19 (KR296684)
92901
92992
+
Ser
GGA
[ENA]
¡û
>PHG181001297
KR296695
Myoviridae
Salmonella phage 41 (KR296695)
91017
91108
+
Ser
GGA
[ENA]
¡û
Identical group No.25901 (1 seq.)
>PHG181006709
MG250486
Myoviridae
Raoultella phage Ro1 (MG250486)
84796
84887
+
Ser
GGA
[ENA]
¡û
Identical group No.32582 (2 seq.)
>PHG181001841
KT934943
Myoviridae
Klebsiella phage vB_KpnM_KB57 (KT934943)
62368
62278
-
Ser
GGA
[ENA]
¡û
>PHG181004281
KY652726
Myoviridae
Klebsiella phage vB_KpnM_BIS47 (KY652726)
45224
45134
-
Ser
GGA
[ENA]
¡û
Identical group No.78400 (1 seq.)
>PHG181006923
MG592671
Myoviridae
Vibrio phage 2.275.O._10N.286.54.E11 (MG592671)
170365
170453
+
Ser
GGA
[ENA]
¡û
Identical group No.100798 (2 seq.)
>PHG0100124
AJ630128
Myoviridae
Synechococcus phage S-PM2 phiFZB24 (AJ630128)
119226
119312
+
Ser
GGA
[ENA]
¡û
>PHG181004529
LN828717
Myoviridae
Synechococcus phage S-PM2 (LN828717)
109682
109768
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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