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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = TGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95671 (2 seq.)
>At2118
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
308534
308618
+
Ser
TGA
[Ensembl]
¡û
>W1610000089
AACL01000001
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AACL]
308533
308622
+
Ser
TGA
[ENA]
¡û
Identical group No.123214 (7 seq.)
>A171005756
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
227566
227651
+
Ser
TGA
-
¡û
>WENV181404548
OGCA01012888
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
603
689
+
Ser
TGA
[ENA]
¢þ
>WENV181404908
OGCB01001669
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
118
33
-
Ser
TGA
[ENA]
¢þ
>WENV181405853
OGCE01006160
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
545
630
+
Ser
TGA
[ENA]
¢þ
>WENV170668464
LAFJ01005730
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
140
225
+
Ser
TGA
[ENA]
¢þ
>W1911654425
QEFH01000012
Nanoarchaeota
Candidatus Nanobsidianus stetteri [QEFH]
4406
4321
-
Ser
TGA
[ENA]
¡û
>W1610018011
APJZ01000001
Nanoarchaeota
Candidatus Nanobsidianus stetteri Nst1 [APJZ]
66500
66415
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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