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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = CCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.248624 (2 seq.)
>A171001903
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
1932376
1932451
+
Arg
CCT
-
¡û
>WENV180327229
OBKT01012755
[OBKT] soil metagenome; soil
276
201
-
Arg
CCT
[ENA]
¢þ
Identical group No.259870 (2 seq.)
>A171004261
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
715875
715800
-
Arg
CCT
-
¡û
>A171004327
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
1320322
1320397
+
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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