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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = GCG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235734 (1 seq.)
>A17A001551
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
1509923
1509828
-
Arg
GCG
-
¡û
Identical group No.244718 (11 seq.)
>A171000236
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
504317
504392
+
Arg
GCG
-
¡û
>A171003394
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
500464
500540
+
Arg
GCG
-
¡û
>A171005925
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
1354547
1354471
-
Arg
GCG
-
¡û
>W1910572973
JNVL01000032
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL]
7553
7477
-
Arg
GCG
[ENA]
¡û
>W1910572996
JOKN01000057
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-N04 [JOKN]
2781
2705
-
Arg
GCG
[ENA]
¡û
>W1910573213
JOSY01000015
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY]
201
277
+
Arg
GCG
[ENA]
¡û
>W1910573254
JOTA01000017
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-B03 [JOTA]
21347
21423
+
Arg
GCG
[ENA]
¡û
>W1910573303
JOTD01000040
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
56617
56693
+
Arg
GCG
[ENA]
¡û
>W1610000550
ABEO01000002
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
98985
99060
+
Arg
GCG
[ENA]
¡û
>W1610005417
AJVI01000014
Nitrososphaerota
Nitrosopumilus sp. SJ [AJVI]
2920
2996
+
Arg
GCG
[ENA]
¡û
>W1610005437
AJVJ01000020
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
2920
2996
+
Arg
GCG
[ENA]
¡û
Identical group No.244864 (1 seq.)
>A171006840
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
1758168
1758092
-
Arg
GCG
-
¡û
Identical group No.259866 (2 seq.)
>A171004253
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
1700027
1700102
+
Arg
GCG
-
¡û
>A171004325
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
572495
572570
+
Arg
GCG
-
¡û
Identical group No.268544 (1 seq.)
>A171006055
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
1111212
1111137
-
Arg
GCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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