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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = TAC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.252658 (2 seq.)
>A171000229
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
177669
177745
+
Val
TAC
-
¡û
>W1610000534
ABEO01000001
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
1083545
1083621
+
Val
TAC
[ENA]
¡û
Identical group No.259865 (2 seq.)
>A171004250
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
880821
880896
+
Val
TAC
-
¡û
>A171004330
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
2358081
2358155
+
Val
TAC
-
¡û
Identical group No.261128 (2 seq.)
>A171007469
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
169014
169089
+
Val
TAC
-
¡û
>W1910285420
FRFC01000001
Nitrososphaerota
Candidatus Nitrosotalea sinensis Nd2 [FRFC]
144724
144649
-
Val
TAC
[ENA]
¡û
Identical group No.264084 (1 seq.)
>A171001905
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
2058958
2059033
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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