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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = TCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244691 (6 seq.)
>A173000010
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
162816
162742
-
Arg
TCG
-
¡û
>A173000118
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
127756
127682
-
Arg
TCG
-
¡û
>A173000256
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
443252
443178
-
Arg
TCG
-
¡û
>W1630000062
ABEO01000001
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
1068692
1068618
-
Arg
TCG
[ENA]
¡û
>W1630000368
AJVI01000005
Nitrososphaerota
Nitrosopumilus sp. SJ [AJVI]
115449
115375
-
Arg
TCG
[ENA]
¡û
>W1630000375
AJVJ01000015
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
66155
66081
-
Arg
TCG
[ENA]
¡û
Identical group No.261131 (1 seq.)
>A171007488
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
227500
227426
-
Arg
TCG
-
¡û
Identical group No.268762 (1 seq.)
>At0094
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
1949406
1949332
-
Arg
TCG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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