This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = TTT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301931 (2 seq.)
>A178000652
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
339165
339073
-
Lys
TTT
-
¡û
>A178000689
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
514164
514255
+
Lys
TTT
-
¡û
Identical group No.320575 (12 seq.)
>A173000270
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
333165
333089
-
Lys
TTT
-
¡û
>A173000360
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
1576269
1576343
+
Lys
TTT
-
¡û
>W1930005183
FRFC01000003
Nitrososphaerota
Candidatus Nitrosotalea sinensis Nd2 [FRFC]
300023
299948
-
Lys
TTT
[ENA]
¡û
>W1930007275
FUYK01000010
Nitrososphaerota
Candidatus Nitrosotalea bavarica SbT1 [FUYK]
11044
11118
+
Lys
TTT
[ENA]
¡û
>W1930018038
MNED01000023
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_38_12 [MNED]
81
7
-
Lys
TTT
[ENA]
¡û
>W1930018054
MNFB01000008
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_4_38_7 [MNFB]
2121
2047
-
Lys
TTT
[ENA]
¡û
>W1930018082
MNGY01000100
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_2_39_13_2 [MNGY]
5243
5169
-
Lys
TTT
[ENA]
¡û
>W1930018084
MNGZ01000016
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_2_39_13_1 [MNGZ]
532
458
-
Lys
TTT
[ENA]
¡û
>W1930018102
MNJT01000015
Nitrososphaerota
Thaumarchaeota archaeon 13_1_20CM_2_39_11 [MNJT]
414
340
-
Lys
TTT
[ENA]
¡û
>W1930018861
MRWN01000041
Nitrososphaerota
Thaumarchaeota archaeon BIN5 [MRWN]
533
458
-
Lys
TTT
[ENA]
¡û
>W1630000938
AVSQ01000002
Nitrososphaerota
Candidatus Nitrosotenuis chungbukensis MY2 [AVSQ]
73030
73104
+
Lys
TTT
[ENA]
¡û
>W1630003651
CBTY010000009
Nitrososphaerota
Candidatus Nitrosotenuis uzonensis N4 [CBTY]
354533
354609
+
Lys
TTT
[ENA]
¡û
Identical group No.320928 (16 seq.)
>A173000009
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
232783
232709
-
Lys
TTT
-
¡û
>A173000117
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
198242
198168
-
Lys
TTT
-
¡û
>A173000126
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
205422
205348
-
Lys
TTT
-
¡û
>A173000255
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
544276
544202
-
Lys
TTT
-
¡û
>A173000260
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1599230
1599304
+
Lys
TTT
-
¡û
>W1930002151
BGKI01000002
Nitrososphaerota
Nitrosopumilus zosterae sp. NM25 [BGKI]
233155
233229
+
Lys
TTT
[ENA]
¡û
>W1930009767
JNVL01000001
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL]
36088
36162
+
Lys
TTT
[ENA]
¡û
>W1930009781
JOSY01000006
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY]
68188
68114
-
Lys
TTT
[ENA]
¡û
>W1930009787
JOTA01000004
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-B03 [JOTA]
34813
34887
+
Lys
TTT
[ENA]
¡û
>W1930009798
JOTD01000033
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
64134
64060
-
Lys
TTT
[ENA]
¡û
>W1630000061
ABEO01000001
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
1138658
1138582
-
Lys
TTT
[ENA]
¡û
>W1630000196
AEXL02000138
Nitrososphaerota
Candidatus Nitrosopumilus salaria salaria BD31 [AEXL]
33580
33504
-
Lys
TTT
[ENA]
¡û
>W1630000376
AJVJ01000016
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
6904
6828
-
Lys
TTT
[ENA]
¡û
>W1630000378
AJVJ01000037
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
107323
107249
-
Lys
TTT
[ENA]
¡û
>W1630010756
LGTD01000426
Nitrososphaerota
Candidatus Nitrosopumilus sp. DDS1 [LGTD]
2090
2014
-
Lys
TTT
[ENA]
¡û
>W1630016212
LQMW01000019
Nitrososphaerota
Nitrosopumilus sp. Nsub [LQMW]
158998
159074
+
Lys
TTT
[ENA]
¡û
Identical group No.360685 (5 seq.)
>A173000340
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
1151126
1151200
+
Lys
TTT
-
¡û
>W1630001044
AXWL01000004
Nitrososphaerota
Thaumarchaeota archaeon SCGC AAA282-K18 [AXWL]
29989
30063
+
Lys
TTT
[ENA]
¡û
>W1630001047
AXWL01000007
Nitrososphaerota
Thaumarchaeota archaeon SCGC AAA282-K18 [AXWL]
7226
7150
-
Lys
TTT
[ENA]
¡û
>W1630009349
JPUE01000084
Nitrososphaerota
Nitrosopumilus sp. PRT-SC01 [JPUE]
15070
15143
+
Lys
TTT
[ENA]
¡û
>W1630010232
LFEY01000005
Nitrososphaerota
Thaumarchaeota archaeon casp-thauma3 [LFEY]
73367
73443
+
Lys
TTT
[ENA]
¡û
Identical group No.391915 (2 seq.)
>A178000420
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
1001107
1001014
-
Lys
TTT
-
¡û
>A179000498
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
2439199
2439106
-
Lys
TTT
-
¡û
Identical group No.415943 (1 seq.)
>A178000185
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
2182666
2182576
-
Lys
TTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK