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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
Anticodon = GGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.689796 (12 seq.)
>W1711272867
LZFQ01000040
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
143544
143618
+
Thr
GGT
[ENA]
¡û
>C171081205
CP018572
Alphaproteobacteria
Marivivens sp. JLT3646 [CP018572]
2351293
2351367
+
Thr
GGT
-
¡û
>WENV180635392
OCRD01020013
[OCRD] marine metagenome; seawater
215
141
-
Thr
GGT
[ENA]
¢þ
>ENV08001180
ABMR01021912
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
76
2
-
Thr
GGT
[ENA]
¡û
>C181049387
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
363399
363325
-
Thr
GGT
-
¡û
>W1910212574
FMJB01000040
Alphaproteobacteria
Donghicola eburneus KarMa [FMJB]
188954
188880
-
Thr
GGT
[ENA]
¡û
>W1910500562
FXZK01000003
Alphaproteobacteria
Flavimaricola marinus CECT 8899 [FXZK]
367520
367446
-
Thr
GGT
[ENA]
¡û
>SRA1001248
SRR001058.10985
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
76
2
-
Thr
GGT
[SRA]
>W1810364948
PVTQ01000002
Alphaproteobacteria
Donghicola tyrosinivorans DSM 100212 [PVTQ]
429421
429347
-
Thr
GGT
[ENA]
¡û
>W1810913123
QVMW01000007
Alphaproteobacteria
Rhodobacteraceae bacterium 63075 [QVMW]
98478
98404
-
Thr
GGT
[ENA]
¡û
>W1611032216
LZFQ01000040
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
143544
143618
+
Thr
GGT
[ENA]
¡û
>W1710574026
FOXY01000007
Alphaproteobacteria
Donghicola eburneus [FOXY]
189084
189010
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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