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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Spirochaetota
Anticodon = TAT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266549 (2 seq.)
>W121034628
AHKT01000012
Spirochaetota
Leptonema illini DSM 21528 [AHKT]
96820
96896
+
Ile
TAT
[ENA]
¡û
>W1710631793
JQDG01000030
Spirochaetota
Leptonema illini [JQDG]
34662
34586
-
Ile
TAT
[ENA]
¡û
Identical group No.267211 (10 seq.)
>WENV180597854
OCPL01063951
[OCPL] human gut metagenome; ENVO:feces
110
35
-
Ile
TAT
[ENA]
¡û
>WENV180675185
OCVV011357027
[OCVV] gut metagenome; gut
521
446
-
Ile
TAT
[ENA]
¡û
>WENV180675186
OCVV011357027
[OCVV] gut metagenome; gut
521
446
-
Ile
TAT
[ENA]
¡û
>WENV183648452
OQVS01016200
[OQVS] human gut metagenome; human gut
3038
3113
+
Ile
TAT
[ENA]
¡û
>W2011812433
UFQJ01000004
Spirochaetota
Treponema pectinovorum Marseille-2-CSURP6642 [UFQJ]
73115
73190
+
Ile
TAT
[ENA]
¡û
>W2011812570
UFQN01000003
Spirochaetota
Treponema pectinovorum Marseille-4-CSURP7639 [UFQN]
14855
14780
-
Ile
TAT
[ENA]
¡û
>W2011812618
UFQO01000002
Spirochaetota
Treponema pectinovorum Marseille-3-CSURP7641 [UFQO]
501741
501816
+
Ile
TAT
[ENA]
¡û
>W2011861577
UOUI01000010
Spirochaetota
Treponema pectinovorum Marseille-1-CSURP6641 [UOUI]
204
279
+
Ile
TAT
[ENA]
¡û
>W2011862322
UPSF01000001
Spirochaetota
Treponema pectinovorum ATCC 700769 [UPSF]
1689817
1689892
+
Ile
TAT
[ENA]
¡û
>W1710601243
FUXC01000016
Spirochaetota
Treponema berlinense [FUXC]
11193
11268
+
Ile
TAT
[ENA]
¡û
Identical group No.332557 (1 seq.)
>W1711422129
MIAQ01000348
Spirochaetota
Spirochaetes bacterium GWB1_59_5 [MIAQ]
11318
11244
-
Ile
TAT
[ENA]
¡û
Identical group No.486421 (1 seq.)
>C11300526
CP001843
Spirochaetota
Treponema primitia ZAS-2 [CP001843]
3705708
3705781
+
Ile
TAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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