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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
Anticodon = CCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320987 (2 seq.)
>ENV08001210
ABMU01089051
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
93
20
-
Arg
CCT
[ENA]
¡û
>SRA1001273
SRR001062.100818
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
93
20
-
Arg
CCT
[SRA]
Identical group No.685905 (2 seq.)
>ENV08001202
ABMU01028865
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
32
106
+
Arg
CCT
[ENA]
¡û
>SRA1001271
SRR001062.86687
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
32
106
+
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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