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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
Anticodon = CTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490793 (4 seq.)
>ENV08001198
ABMU01009694
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
15
87
+
Sup
CTA
[ENA]
¡û
>ENV08001199
ABMU01012084
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
15
87
+
Sup
CTA
[ENA]
¡û
>SRA1001267
SRR001062.43557
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
15
87
+
Sup
CTA
[SRA]
>SRA1001280
SRR001062.211160
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
15
87
+
Sup
CTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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