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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
Anticodon = GCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.421898 (13 seq.)
>w028009
ABCR01000004
Alphaproteobacteria
Roseobacter sp. AzwK-3b [ABCR]
357789
357863
+
Gly
GCC
[ENA]
¡û
>WENV180391784
OBPN01046372
[OBPN] marine metagenome; seawater
397
323
-
Gly
GCC
[ENA]
¢þ
>WENV180592351
OCOW01001321
[OCOW] marine metagenome; Sterivex cartridges
725
651
-
Gly
GCC
[ENA]
¢þ
>WENV182549746
OJBY01026456
[OJBY] seawater metagenome; Sea water
438
512
+
Gly
GCC
[ENA]
¢þ
>ENV08001211
ABMU01091272
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
21
95
+
Gly
GCC
[ENA]
¡û
>ENV08001217
ABMU01125335
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
86
12
-
Gly
GCC
[ENA]
¡û
>WENV170117473
CENJ01012923
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
93
167
+
Gly
GCC
[ENA]
¢þ
>W1910442710
FWFL01000003
Alphaproteobacteria
Roseovarius litorisediminis CECT 8287 [FWFL]
143973
143899
-
Gly
GCC
[ENA]
¡û
>W1910443125
FWFU01000003
Alphaproteobacteria
Roseovarius halotolerans CECT 8110 [FWFU]
472458
472532
+
Gly
GCC
[ENA]
¡û
>W1910468972
FWXB01000002
Alphaproteobacteria
Roseovarius aestuarii CECT 7745 [FWXB]
1340
1266
-
Gly
GCC
[ENA]
¡û
>SRA1001279
SRR001062.196399
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
86
12
-
Gly
GCC
[SRA]
>SRA1001285
SRR001062.276181
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
21
95
+
Gly
GCC
[SRA]
>W1710718752
LFEU01000069
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha9 [LFEU]
1371
1297
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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