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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
Anticodon = GCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.685906 (4 seq.)
>ENV08001211
ABMU01091272
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
21
95
+
Gly
GCC
[ENA]
¡û
>ENV08001217
ABMU01125335
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
86
12
-
Gly
GCC
[ENA]
¡û
>SRA1001279
SRR001062.196399
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
86
12
-
Gly
GCC
[SRA]
>SRA1001285
SRR001062.276181
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
21
95
+
Gly
GCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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