This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico (SRP000136)
Anticodon = TAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.109260 (3 seq.)
>ENV08000613
ABMG01012443
stromatolite metagenome; viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico
85
1
-
Leu
TAG
[ENA]
¡û
>W1910765849
MNVZ01000010
Unclassified
Candidatus Pacearchaeota archaeon CG1_02_39_14 [MNVZ]
75147
75060
-
Leu
TAG
[ENA]
¡û
>SRA1000583
SRR001044.132456
Stromatolites, viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico (SRP000136)
85
1
-
Leu
TAG
[SRA]
Identical group No.234128 (2 seq.)
>ENV08000624
ABMG01028710
stromatolite metagenome; viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico
79
1
-
Pseudo
TAG
[ENA]
¡û
>SRA1000577
SRR001044.121297
Stromatolites, viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico (SRP000136)
79
1
-
Leu
TAG
[SRA]
Identical group No.431092 (2 seq.)
>ENV08000621
ABMG01027773
stromatolite metagenome; viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico
99
23
-
Leu
TAG
[ENA]
¡û
>SRA1000613
SRR001044.230626
Stromatolites, viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico (SRP000136)
99
23
-
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK