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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = ACG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306789 (1 seq.)
>C10100323
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1275956
1275880
-
Arg
ACG
[Ensembl]
¡û
Identical group No.363955 (3 seq.)
>W141146877
AWWC01000028
Synergistota
Jonquetella sp. BV3C21 [AWWC]
759
683
-
Arg
ACG
[ENA]
¡û
>W09132965
ACOO02000018
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
131034
131110
+
Arg
ACG
[ENA]
¡û
>W121017489
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
237621
237697
+
Arg
ACG
[ENA]
¡û
Identical group No.441660 (1 seq.)
>W141278992
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
935507
935583
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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