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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CAA
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.109243 (1 seq.)
>W141278947
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
306120
306033
-
Leu
CAA
[ENA]
¡û
Identical group No.130295 (1 seq.)
>W11138628
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
484822
484736
-
Leu
CAA
[ENA]
¡û
Identical group No.151455 (1 seq.)
>W141279016
JAFZ01000002
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
365858
365772
-
Leu
CAA
[ENA]
¡û
Identical group No.158021 (3 seq.)
>W1711137621
LVBQ01000038
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1952
1867
-
Leu
CAA
[ENA]
¡û
>W1712039350
NFJQ01000001
Synergistota
Cloacibacillus sp. An23 [NFJQ]
213537
213452
-
Leu
CAA
[ENA]
¡û
>W1610948741
LVBQ01000038
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1952
1867
-
Leu
CAA
[ENA]
¡û
Identical group No.158487 (6 seq.)
>W141701213
JMKI01000037
Synergistota
Synergistes jonesii [JMKI]
47208
47123
-
Leu
CAA
[ENA]
¡û
>W1710629250
JPZQ01000046
Synergistota
Synergistes jonesii [JPZQ]
233
148
-
Leu
CAA
[ENA]
¡û
>W1710629294
JPZR01000036
Synergistota
Synergistes jonesii [JPZR]
1852
1767
-
Leu
CAA
[ENA]
¡û
>W1710629336
JPZS01000039
Synergistota
Synergistes jonesii [JPZS]
235
150
-
Leu
CAA
[ENA]
¡û
>W1710631819
JQEK01000007
Synergistota
Synergistes jonesii [JQEK]
235
150
-
Leu
CAA
[ENA]
¡û
>W1710631884
JQEL01000041
Synergistota
Synergistes jonesii [JQEL]
235
150
-
Leu
CAA
[ENA]
¡û
Identical group No.166477 (3 seq.)
>W141146839
AWWC01000006
Synergistota
Jonquetella sp. BV3C21 [AWWC]
109599
109514
-
Leu
CAA
[ENA]
¡û
>W09132993
ACOO02000037
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
113851
113766
-
Leu
CAA
[ENA]
¡û
>W121017473
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
218423
218338
-
Leu
CAA
[ENA]
¡û
Identical group No.174556 (1 seq.)
>W121031640
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
1279960
1280045
+
Leu
CAA
[ENA]
¡û
Identical group No.175566 (1 seq.)
>W09108906
ABTR01000002
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
230174
230089
-
Leu
CAA
[ENA]
¡û
Identical group No.176398 (1 seq.)
>W1710608694
FXBB01000013
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
35141
35056
-
Leu
CAA
[ENA]
¡û
Identical group No.178518 (1 seq.)
>W141452013
JFBR01000001
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
967102
967187
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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