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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.706863 (1 seq.)
>W11138602
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
915900
915826
-
Val
CAC
[ENA]
¡û
Identical group No.762364 (2 seq.)
>W141278985
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
76660
76586
-
Val
CAC
[ENA]
¡û
>W141278986
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
67927
67853
-
Val
CAC
[ENA]
¡û
Identical group No.771938 (1 seq.)
>C121005691
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1436731
1436805
+
Val
CAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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