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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CAG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91465 (6 seq.)
>W141701224
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
2312
2225
-
Leu
CAG
[ENA]
¡û
>W1710629265
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
1482
1395
-
Leu
CAG
[ENA]
¡û
>W1710629306
JPZR01000046
Synergistota
Synergistes jonesii [JPZR]
1484
1397
-
Leu
CAG
[ENA]
¡û
>W1710629348
JPZS01000048
Synergistota
Synergistes jonesii [JPZS]
1482
1395
-
Leu
CAG
[ENA]
¡û
>W1710631834
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
1482
1395
-
Leu
CAG
[ENA]
¡û
>W1710631899
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
1482
1395
-
Leu
CAG
[ENA]
¡û
Identical group No.98963 (2 seq.)
>W1711137556
LVBO01000133
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1061
974
-
Leu
CAG
[ENA]
¡û
>W1610948676
LVBO01000133
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1061
974
-
Leu
CAG
[ENA]
¡û
Identical group No.119135 (1 seq.)
>W1712039351
NFJQ01000001
Synergistota
Cloacibacillus sp. An23 [NFJQ]
1267
1181
-
Leu
CAG
[ENA]
¡û
Identical group No.119773 (1 seq.)
>C10100305
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
651412
651498
+
Leu
CAG
[Ensembl]
¡û
Identical group No.129800 (1 seq.)
>W1711629564
MPPC01000017
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
139552
139638
+
Leu
CAG
[ENA]
¡û
Identical group No.130296 (1 seq.)
>W11138629
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
358307
358221
-
Leu
CAG
[ENA]
¡û
Identical group No.132818 (3 seq.)
>W141146840
AWWC01000008
Synergistota
Jonquetella sp. BV3C21 [AWWC]
218043
218129
+
Leu
CAG
[ENA]
¡û
>W09132983
ACOO02000031
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
159197
159111
-
Leu
CAG
[ENA]
¡û
>W121017512
AGRU01000004
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
250044
249958
-
Leu
CAG
[ENA]
¡û
Identical group No.137043 (2 seq.)
>W1711137631
LVBQ01000081
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
14566
14652
+
Leu
CAG
[ENA]
¡û
>W1610948751
LVBQ01000081
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
14566
14652
+
Leu
CAG
[ENA]
¡û
Identical group No.146960 (1 seq.)
>W09108909
ABTR01000002
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
68545
68459
-
Leu
CAG
[ENA]
¡û
Identical group No.148647 (1 seq.)
>W141278955
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
278209
278295
+
Leu
CAG
[ENA]
¡û
Identical group No.151457 (1 seq.)
>W141279019
JAFZ01000002
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
165083
164997
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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