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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CAG
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87968 (4 seq.)
>WENV170676911
LDZS01003185
[LDZS] terrestrial metagenome; oil reservoir sample K3
12209
12122
-
Leu
CAG
[ENA]
¢þ
>WENV170969819
MTKW01040853
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
953
866
-
Leu
CAG
[ENA]
¢þ
>W1610613279
LGFQ01000005
Synergistota
Synergistales bacterium 54_24 [LGFQ]
12209
12122
-
Leu
CAG
[ENA]
¡û
>W1710734486
LGFQ01000005
Synergistota
Synergistales bacterium 54_24 [LGFQ]
12209
12122
-
Leu
CAG
[ENA]
¡û
Identical group No.91465 (6 seq.)
>W141701224
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
2312
2225
-
Leu
CAG
[ENA]
¡û
>W1710629265
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
1482
1395
-
Leu
CAG
[ENA]
¡û
>W1710629306
JPZR01000046
Synergistota
Synergistes jonesii [JPZR]
1484
1397
-
Leu
CAG
[ENA]
¡û
>W1710629348
JPZS01000048
Synergistota
Synergistes jonesii [JPZS]
1482
1395
-
Leu
CAG
[ENA]
¡û
>W1710631834
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
1482
1395
-
Leu
CAG
[ENA]
¡û
>W1710631899
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
1482
1395
-
Leu
CAG
[ENA]
¡û
Identical group No.96320 (3 seq.)
>WENV180797552
ODJB01076301
[ODJB] human metagenome; G_DNA_Supragingival plaque
771
684
-
Leu
CAG
[ENA]
¢þ
>WENV181080928
OEAS01100936
[OEAS] human metagenome; G_DNA_Supragingival plaque
247
334
+
Leu
CAG
[ENA]
¢þ
>C161104030
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
2612930
2613017
+
Leu
CAG
-
¡û
Identical group No.98963 (2 seq.)
>W1711137556
LVBO01000133
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1061
974
-
Leu
CAG
[ENA]
¡û
>W1610948676
LVBO01000133
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1061
974
-
Leu
CAG
[ENA]
¡û
Identical group No.116241 (7 seq.)
>C171050529
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1215888
1215974
+
Leu
CAG
-
¡û
>WENV180544562
OCIQ01039237
[OCIQ] human gut metagenome; human gut
340
254
-
Leu
CAG
[ENA]
¢þ
>WENV181914875
OGYF01001633
[OGYF] human gut metagenome; faeces
3447
3533
+
Leu
CAG
[ENA]
¢þ
>WENV182031208
OHCS01005482
[OHCS] human gut metagenome; feces
2477
2391
-
Leu
CAG
[ENA]
¢þ
>WENV182180624
OHNO01004485
[OHNO] human gut metagenome; feces
1378
1292
-
Leu
CAG
[ENA]
¢þ
>WENV182212870
OHQG01012221
[OHQG] human gut metagenome; feces
1453
1367
-
Leu
CAG
[ENA]
¢þ
>WENV182215716
OHQM01001624
[OHQM] human gut metagenome; feces
6723
6637
-
Leu
CAG
[ENA]
¢þ
Identical group No.118716 (6 seq.)
>WENV170008175
AMZC01003698
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
673
587
-
Leu
CAG
[ENA]
¢þ
>WENV170563531
CZCB01020677
[CZCB] anaerobic digester metagenome; anaerobic digester
4875
4961
+
Leu
CAG
[ENA]
¢þ
>W09126621
ACJX01000169
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
12682
12596
-
Leu
CAG
[ENA]
¡û
>C121008055
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
456185
456271
+
Leu
CAG
[Ensembl]
¡û
>W1710530809
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
80735
80821
+
Leu
CAG
[ENA]
¡û
>W1710594084
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
622399
622313
-
Leu
CAG
[ENA]
¡û
Identical group No.119135 (1 seq.)
>W1712039351
NFJQ01000001
Synergistota
Cloacibacillus sp. An23 [NFJQ]
1267
1181
-
Leu
CAG
[ENA]
¡û
Identical group No.119773 (1 seq.)
>C10100305
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
651412
651498
+
Leu
CAG
[Ensembl]
¡û
Identical group No.122513 (4 seq.)
>WENV170676988
LDZS01004020
[LDZS] terrestrial metagenome; oil reservoir sample K3
2330
2416
+
Leu
CAG
[ENA]
¢þ
>C121005679
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
683901
683987
+
Leu
CAG
[Ensembl]
¡û
>W1610613350
LGFS01000182
Synergistota
Thermovirga lienii [LGFS]
2330
2416
+
Leu
CAG
[ENA]
¡û
>W1710734557
LGFS01000182
Synergistota
Thermovirga lienii [LGFS]
2330
2416
+
Leu
CAG
[ENA]
¡û
Identical group No.125096 (7 seq.)
>WENV181908794
OGYB01000804
[OGYB] human gut metagenome; faeces
16982
17068
+
Leu
CAG
[ENA]
¢þ
>WENV182221074
OHQS01043708
[OHQS] human gut metagenome; feces
623
537
-
Leu
CAG
[ENA]
¢þ
>WENV182274856
OHUK01017414
[OHUK] human gut metagenome; feces
279
193
-
Leu
CAG
[ENA]
¢þ
>WENV182538398
OIXH01097490
[OIXH] human gut metagenome; faeces
499
585
+
Leu
CAG
[ENA]
¢þ
>WENV183038534
OLGB01000693
[OLGB] human gut metagenome; faeces
45224
45310
+
Leu
CAG
[ENA]
¢þ
>W141452014
JFBR01000001
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
1189343
1189429
+
Leu
CAG
[ENA]
¡û
>W121000471
ACUH01000041
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
140164
140250
+
Leu
CAG
[ENA]
¡û
Identical group No.129800 (1 seq.)
>W1711629564
MPPC01000017
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
139552
139638
+
Leu
CAG
[ENA]
¡û
Identical group No.130257 (4 seq.)
>W1711744518
MUHX01000042
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
12747
12661
-
Leu
CAG
[ENA]
¡û
>WENV183763995
PPYE01311631
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
12768
12682
-
Leu
CAG
[ENA]
¢þ
>W10113044
ADFP01000117
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
12691
12605
-
Leu
CAG
[ENA]
¡û
>W11116271
ADFP01000117
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
12691
12605
-
Leu
CAG
[ENA]
¡û
Identical group No.130296 (1 seq.)
>W11138629
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
358307
358221
-
Leu
CAG
[ENA]
¡û
Identical group No.132818 (3 seq.)
>W141146840
AWWC01000008
Synergistota
Jonquetella sp. BV3C21 [AWWC]
218043
218129
+
Leu
CAG
[ENA]
¡û
>W09132983
ACOO02000031
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
159197
159111
-
Leu
CAG
[ENA]
¡û
>W121017512
AGRU01000004
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
250044
249958
-
Leu
CAG
[ENA]
¡û
Identical group No.135299 (2 seq.)
>W131157321
AQRZ01000033
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
11990
11904
-
Leu
CAG
[ENA]
¡û
>WENV170006637
AMWB02038678
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
154
240
+
Leu
CAG
[ENA]
¢þ
Identical group No.137043 (2 seq.)
>W1711137631
LVBQ01000081
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
14566
14652
+
Leu
CAG
[ENA]
¡û
>W1610948751
LVBQ01000081
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
14566
14652
+
Leu
CAG
[ENA]
¡û
Identical group No.142685 (3 seq.)
>WENV170656091
JTFN01130870
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
548
462
-
Leu
CAG
[ENA]
¢þ
>WENV170657466
JTFO01160273
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
109
23
-
Leu
CAG
[ENA]
¢þ
>W1710608691
FXBB01000010
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
13408
13322
-
Leu
CAG
[ENA]
¡û
Identical group No.145399 (4 seq.)
>WENV181409341
OGCI01000113
[OGCI] hot springs metagenome; Hot spring water
87732
87818
+
Leu
CAG
[ENA]
¢þ
>W09110124
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
346587
346673
+
Leu
CAG
[ENA]
¡û
>C10113008
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1238737
1238651
-
Leu
CAG
[Ensembl]
¡û
>W121031621
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
619433
619519
+
Leu
CAG
[ENA]
¡û
Identical group No.146960 (1 seq.)
>W09108909
ABTR01000002
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
68545
68459
-
Leu
CAG
[ENA]
¡û
Identical group No.148647 (1 seq.)
>W141278955
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
278209
278295
+
Leu
CAG
[ENA]
¡û
Identical group No.151457 (1 seq.)
>W141279019
JAFZ01000002
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
165083
164997
-
Leu
CAG
[ENA]
¡û
Identical group No.160059 (6 seq.)
>WENV170677153
LDZT01003267
[LDZT] terrestrial metagenome; oil reservoir sample SB1
12684
12599
-
Leu
CAG
[ENA]
¢þ
>WENV170679038
LDZU01006766
[LDZU] terrestrial metagenome; oil reservoir sample SB2
4274
4359
+
Leu
CAG
[ENA]
¢þ
>W1610613614
LGGB01000019
Synergistota
Synergistales bacterium 53_16 [LGGB]
12684
12599
-
Leu
CAG
[ENA]
¡û
>W1610614485
LGHG01000017
Synergistota
Synergistales bacterium 54_9 [LGHG]
4274
4359
+
Leu
CAG
[ENA]
¡û
>W1710734786
LGGB01000019
Synergistota
Synergistales bacterium 53_16 [LGGB]
12684
12599
-
Leu
CAG
[ENA]
¡û
>W1710735466
LGHG01000017
Synergistota
Synergistales bacterium 54_9 [LGHG]
4274
4359
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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