This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CAT
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302262 (2 seq.)
>C121008077
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
924760
924684
-
Met
CAT
[Ensembl]
¡û
>W1710594051
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
162408
162484
+
Met
CAT
[ENA]
¡û
Identical group No.302269 (2 seq.)
>C121008065
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
803962
804038
+
Met
CAT
[Ensembl]
¡û
>W1710594094
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
285134
285058
-
Met
CAT
[ENA]
¡û
Identical group No.302270 (2 seq.)
>C121008066
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
804047
804123
+
Met
CAT
[Ensembl]
¡û
>W1710594095
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
285049
284973
-
Met
CAT
[ENA]
¡û
Identical group No.304069 (1 seq.)
>W1712039375
NFJQ01000008
Synergistota
Cloacibacillus sp. An23 [NFJQ]
85413
85337
-
Met
CAT
[ENA]
¡û
Identical group No.307531 (6 seq.)
>W141701190
JMKI01000002
Synergistota
Synergistes jonesii [JMKI]
58079
58003
-
Met
CAT
[ENA]
¡û
>W1710629233
JPZQ01000001
Synergistota
Synergistes jonesii [JPZQ]
56036
55960
-
Met
CAT
[ENA]
¡û
>W1710629276
JPZR01000002
Synergistota
Synergistes jonesii [JPZR]
40592
40516
-
Met
CAT
[ENA]
¡û
>W1710629319
JPZS01000001
Synergistota
Synergistes jonesii [JPZS]
56036
55960
-
Met
CAT
[ENA]
¡û
>W1710631850
JQEK01000047
Synergistota
Synergistes jonesii [JQEK]
128751
128827
+
Met
CAT
[ENA]
¡û
>W1710631867
JQEL01000001
Synergistota
Synergistes jonesii [JQEL]
56035
55959
-
Met
CAT
[ENA]
¡û
Identical group No.349175 (1 seq.)
>C161104024
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
875538
875614
+
Met
CAT
-
¡û
Identical group No.352495 (1 seq.)
>W11138596
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1292373
1292449
+
Met
CAT
[ENA]
¡û
Identical group No.381935 (2 seq.)
>W09126604
ACJX01000117
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
26682
26606
-
Met
CAT
[ENA]
¡û
>W1710530826
FNPD01000003
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
248947
248871
-
Met
CAT
[ENA]
¡û
Identical group No.381936 (2 seq.)
>W09126605
ACJX01000117
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
26601
26525
-
Met
CAT
[ENA]
¡û
>W1710530827
FNPD01000003
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
248866
248790
-
Met
CAT
[ENA]
¡û
Identical group No.430983 (1 seq.)
>W141278962
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
435787
435863
+
Met
CAT
[ENA]
¡û
Identical group No.430984 (1 seq.)
>W141278964
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
579621
579697
+
Met
CAT
[ENA]
¡û
Identical group No.440913 (1 seq.)
>C121005687
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
996086
996162
+
Met
CAT
[Ensembl]
¡û
Identical group No.554146 (3 seq.)
>W141146855
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
95736
95811
+
Met
CAT
[ENA]
¡û
>W09132957
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
95970
96045
+
Met
CAT
[ENA]
¡û
>W121017484
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
100710
100785
+
Met
CAT
[ENA]
¡û
Identical group No.771757 (1 seq.)
>W1711744484
MUHX01000002
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
110709
110635
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK