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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CCC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.541237 (1 seq.)
>W11300943
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
219423
219348
-
Gly
CCC
[ENA]
¡û
Identical group No.553413 (3 seq.)
>W141146837
AWWC01000006
Synergistota
Jonquetella sp. BV3C21 [AWWC]
43493
43568
+
Gly
CCC
[ENA]
¡û
>W09132991
ACOO02000037
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
46849
46924
+
Gly
CCC
[ENA]
¡û
>W121017471
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
146266
146341
+
Gly
CCC
[ENA]
¡û
Identical group No.621937 (1 seq.)
>W09108924
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
214076
214001
-
Gly
CCC
[ENA]
¡û
Identical group No.640935 (1 seq.)
>W1711744486
MUHX01000004
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
33967
33892
-
Gly
CCC
[ENA]
¡û
Identical group No.641273 (1 seq.)
>C121005689
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1017364
1017439
+
Gly
CCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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