This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CCC
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.461173 (22 seq.)
>W131157322
AQRZ01000036
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
11555
11480
-
Gly
CCC
[ENA]
¡û
>WENV180346855
OBLN01355226
[OBLN] sediment metagenome; sediment
234
159
-
Gly
CCC
[ENA]
¢þ
>WENV181230669
OFEK01002237
[OFEK] activated sludge metagenome; Anaerobic digester
2262
2187
-
Gly
CCC
[ENA]
¢þ
>WENV181312425
OFJB01113237
[OFJB] sludge metagenome; sludge
502
427
-
Gly
CCC
[ENA]
¢þ
>WENV170676501
LDZS01000244
[LDZS] terrestrial metagenome; oil reservoir sample K3
6509
6434
-
Gly
CCC
[ENA]
¢þ
>WENV170676905
LDZS01003181
[LDZS] terrestrial metagenome; oil reservoir sample K3
56390
56465
+
Gly
CCC
[ENA]
¢þ
>WENV170678357
LDZT01014035
[LDZT] terrestrial metagenome; oil reservoir sample SB1
9062
8987
-
Gly
CCC
[ENA]
¢þ
>WENV170678619
LDZU01003377
[LDZU] terrestrial metagenome; oil reservoir sample SB2
6077
6002
-
Gly
CCC
[ENA]
¢þ
>WENV170967234
MTKW01000525
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
228319
228244
-
Gly
CCC
[ENA]
¢þ
>WENV170971385
MTKX01004560
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
79004
78929
-
Gly
CCC
[ENA]
¢þ
>WENV170976204
MTKZ01005715
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
22194
22269
+
Gly
CCC
[ENA]
¢þ
>W09126614
ACJX01000145
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
4579
4504
-
Gly
CCC
[ENA]
¡û
>C121008059
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
697609
697684
+
Gly
CCC
[Ensembl]
¡û
>W121031637
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
878351
878426
+
Gly
CCC
[ENA]
¡û
>W1610613273
LGFQ01000001
Synergistota
Synergistales bacterium 54_24 [LGFQ]
56390
56465
+
Gly
CCC
[ENA]
¡û
>W1610613709
LGGE01000028
Synergistota
Synergistales bacterium 57_84 [LGGE]
9062
8987
-
Gly
CCC
[ENA]
¡û
>W1610614157
LGGV01000002
Synergistota
Synergistales bacterium 58_81 [LGGV]
6077
6002
-
Gly
CCC
[ENA]
¡û
>W1710530813
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
296055
296130
+
Gly
CCC
[ENA]
¡û
>W1710594088
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
376488
376413
-
Gly
CCC
[ENA]
¡û
>W1710734480
LGFQ01000001
Synergistota
Synergistales bacterium 54_24 [LGFQ]
56390
56465
+
Gly
CCC
[ENA]
¡û
>W1710734862
LGGE01000028
Synergistota
Synergistales bacterium 57_84 [LGGE]
9062
8987
-
Gly
CCC
[ENA]
¡û
>W1710735240
LGGV01000002
Synergistota
Synergistales bacterium 58_81 [LGGV]
6077
6002
-
Gly
CCC
[ENA]
¡û
Identical group No.488003 (5 seq.)
>W1712039388
NFJQ01000011
Synergistota
Cloacibacillus sp. An23 [NFJQ]
31630
31555
-
Gly
CCC
[ENA]
¡û
>WENV180096748
MTBK01144849
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
192367
192292
-
Gly
CCC
[ENA]
¢þ
>WENV183580394
OOCM01090359
[OOCM] human gut metagenome; human gut
110
35
-
Gly
CCC
[ENA]
¢þ
>WENV183712384
PDWI01098104
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1276
1201
-
Gly
CCC
[ENA]
¢þ
>WENV183716741
PDWJ01000160
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1665
1590
-
Gly
CCC
[ENA]
¢þ
Identical group No.490523 (10 seq.)
>W1711629546
MPPC01000006
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
44314
44389
+
Gly
CCC
[ENA]
¡û
>WENV180096327
MTBK01123758
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
273
348
+
Gly
CCC
[ENA]
¢þ
>W141279010
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1334284
1334209
-
Gly
CCC
[ENA]
¡û
>WENV170655222
JTFN01012656
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
38
113
+
Gly
CCC
[ENA]
¢þ
>WENV170656560
JTFO01025071
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1541
1616
+
Gly
CCC
[ENA]
¢þ
>WENV170657067
JTFO01075884
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
311
386
+
Gly
CCC
[ENA]
¢þ
>WENV170716609
LSQX01005233
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3489
3564
+
Gly
CCC
[ENA]
¢þ
>WENV170725207
LSQX01334504
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
38184
38109
-
Gly
CCC
[ENA]
¢þ
>C10100314
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
837835
837910
+
Gly
CCC
[Ensembl]
¡û
>W1710608676
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
175779
175704
-
Gly
CCC
[ENA]
¡û
Identical group No.491404 (19 seq.)
>C171050563
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1856162
1856087
-
Gly
CCC
-
¡û
>WENV181614375
OGLV01054624
[OGLV] metagenome; Human gut stool
445
370
-
Gly
CCC
[ENA]
¢þ
>WENV181637882
OGNB01077251
[OGNB] metagenome; Human gut stool
171
96
-
Gly
CCC
[ENA]
¢þ
>WENV181908462
OGYB01000037
[OGYB] human gut metagenome; faeces
23319
23244
-
Gly
CCC
[ENA]
¢þ
>WENV181910805
OGYC01064482
[OGYC] human gut metagenome; faeces
433
508
+
Gly
CCC
[ENA]
¢þ
>WENV181914363
OGYF01000160
[OGYF] human gut metagenome; faeces
68418
68493
+
Gly
CCC
[ENA]
¢þ
>WENV182031104
OHCS01002723
[OHCS] human gut metagenome; feces
1725
1800
+
Gly
CCC
[ENA]
¢þ
>WENV182215769
OHQM01002127
[OHQM] human gut metagenome; feces
1559
1634
+
Gly
CCC
[ENA]
¢þ
>WENV182883699
OKSB01026803
[OKSB] human gut metagenome; faeces
1146
1071
-
Gly
CCC
[ENA]
¢þ
>WENV183039147
OLGB01003594
[OLGB] human gut metagenome; faeces
2016
1941
-
Gly
CCC
[ENA]
¢þ
>WENV183484377
OMFO01027858
[OMFO] human gut metagenome; feces
380
305
-
Gly
CCC
[ENA]
¢þ
>W141452049
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
451755
451680
-
Gly
CCC
[ENA]
¡û
>W141701217
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
83930
83855
-
Gly
CCC
[ENA]
¡û
>W121000500
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
69934
69859
-
Gly
CCC
[ENA]
¡û
>W1710629258
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
83099
83024
-
Gly
CCC
[ENA]
¡û
>W1710629308
JPZR01000047
Synergistota
Synergistes jonesii [JPZR]
423
348
-
Gly
CCC
[ENA]
¡û
>W1710629350
JPZS01000049
Synergistota
Synergistes jonesii [JPZS]
56238
56163
-
Gly
CCC
[ENA]
¡û
>W1710631827
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
83102
83027
-
Gly
CCC
[ENA]
¡û
>W1710631892
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
83099
83024
-
Gly
CCC
[ENA]
¡û
Identical group No.500378 (8 seq.)
>WENV180094833
MTBK01033955
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
133
208
+
Gly
CCC
[ENA]
¢þ
>WENV183515015
OMKS01042409
[OMKS] sediment metagenome; hot spring sediment
1573
1648
+
Gly
CCC
[ENA]
¢þ
>WENV170677171
LDZT01003318
[LDZT] terrestrial metagenome; oil reservoir sample SB1
147
222
+
Gly
CCC
[ENA]
¢þ
>WENV170679055
LDZU01006810
[LDZU] terrestrial metagenome; oil reservoir sample SB2
12680
12605
-
Gly
CCC
[ENA]
¢þ
>W1610613632
LGGB01000070
Synergistota
Synergistales bacterium 53_16 [LGGB]
147
222
+
Gly
CCC
[ENA]
¡û
>W1610614502
LGHG01000061
Synergistota
Synergistales bacterium 54_9 [LGHG]
12680
12605
-
Gly
CCC
[ENA]
¡û
>W1710734804
LGGB01000070
Synergistota
Synergistales bacterium 53_16 [LGGB]
147
222
+
Gly
CCC
[ENA]
¡û
>W1710735483
LGHG01000061
Synergistota
Synergistales bacterium 54_9 [LGHG]
12680
12605
-
Gly
CCC
[ENA]
¡û
Identical group No.518812 (9 seq.)
>WENV180094548
MTBK01014500
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
725
800
+
Gly
CCC
[ENA]
¢þ
>WENV182621077
OJKI01048812
[OJKI] metagenome; faeces
426
351
-
Gly
CCC
[ENA]
¢þ
>W141278982
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
826127
826052
-
Gly
CCC
[ENA]
¡û
>WENV183518397
OMNQ01004160
[OMNQ] human gut metagenome; feces
3693
3768
+
Gly
CCC
[ENA]
¢þ
>WENV183721243
PDWJ01060518
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
829
754
-
Gly
CCC
[ENA]
¢þ
>WENV170040237
CDYS01024316
[CDYS] gut metagenome; human stools
43083
43008
-
Gly
CCC
[ENA]
¢þ
>WENV170671744
LAHU01147386
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
520
445
-
Gly
CCC
[ENA]
¢þ
>W11172512
AFSL01000074
Bacteroidota
Thermophagus xiamenensis HS1 [AFSL]
68906
68979
+
Gly
CCC
[ENA]
¡û
>W1710559939
FONA01000004
Bacteroidota
Thermophagus xiamenensis [FONA]
160170
160243
+
Gly
CCC
[ENA]
¡û
Identical group No.541210 (4 seq.)
>WENV181989192
OHAO01004268
[OHAO] human gut metagenome; faeces
125
50
-
Gly
CCC
[ENA]
¢þ
>WENV183763885
PPYE01311176
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
49395
49470
+
Gly
CCC
[ENA]
¢þ
>W10113043
ADFP01000116
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
7543
7618
+
Gly
CCC
[ENA]
¡û
>W11116270
ADFP01000116
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
7543
7618
+
Gly
CCC
[ENA]
¡û
Identical group No.541237 (1 seq.)
>W11300943
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
219423
219348
-
Gly
CCC
[ENA]
¡û
Identical group No.553413 (3 seq.)
>W141146837
AWWC01000006
Synergistota
Jonquetella sp. BV3C21 [AWWC]
43493
43568
+
Gly
CCC
[ENA]
¡û
>W09132991
ACOO02000037
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
46849
46924
+
Gly
CCC
[ENA]
¡û
>W121017471
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
146266
146341
+
Gly
CCC
[ENA]
¡û
Identical group No.560599 (6 seq.)
>W1711137620
LVBQ01000037
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
97278
97203
-
Gly
CCC
[ENA]
¡û
>WENV181080626
OEAS01063371
[OEAS] human metagenome; G_DNA_Supragingival plaque
1114
1039
-
Gly
CCC
[ENA]
¢þ
>WENV170677175
LDZT01003441
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2333
2258
-
Gly
CCC
[ENA]
¢þ
>W1610613636
LGGB01000193
Synergistota
Synergistales bacterium 53_16 [LGGB]
2333
2258
-
Gly
CCC
[ENA]
¡û
>W1610948740
LVBQ01000037
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
97278
97203
-
Gly
CCC
[ENA]
¡û
>W1710734808
LGGB01000193
Synergistota
Synergistales bacterium 53_16 [LGGB]
2333
2258
-
Gly
CCC
[ENA]
¡û
Identical group No.621937 (1 seq.)
>W09108924
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
214076
214001
-
Gly
CCC
[ENA]
¡û
Identical group No.621938 (3 seq.)
>WENV181409417
OGCI01000159
[OGCI] hot springs metagenome; Hot spring water
27573
27498
-
Gly
CCC
[ENA]
¢þ
>W09110145
ABUW01000004
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
87181
87256
+
Gly
CCC
[ENA]
¡û
>C10112989
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
890803
890878
+
Gly
CCC
[Ensembl]
¡û
Identical group No.640935 (1 seq.)
>W1711744486
MUHX01000004
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
33967
33892
-
Gly
CCC
[ENA]
¡û
Identical group No.641273 (1 seq.)
>C121005689
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1017364
1017439
+
Gly
CCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK