This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CCG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304072 (1 seq.)
>W1712039391
NFJQ01000012
Synergistota
Cloacibacillus sp. An23 [NFJQ]
123289
123213
-
Arg
CCG
[ENA]
¡û
Identical group No.307534 (6 seq.)
>W141701204
JMKI01000036
Synergistota
Synergistes jonesii [JMKI]
10264
10340
+
Arg
CCG
[ENA]
¡û
>W1710629245
JPZQ01000040
Synergistota
Synergistes jonesii [JPZQ]
9366
9442
+
Arg
CCG
[ENA]
¡û
>W1710629289
JPZR01000030
Synergistota
Synergistes jonesii [JPZR]
9367
9443
+
Arg
CCG
[ENA]
¡û
>W1710629331
JPZS01000033
Synergistota
Synergistes jonesii [JPZS]
9366
9442
+
Arg
CCG
[ENA]
¡û
>W1710631841
JQEK01000045
Synergistota
Synergistes jonesii [JQEK]
9366
9442
+
Arg
CCG
[ENA]
¡û
>W1710631879
JQEL01000036
Synergistota
Synergistes jonesii [JQEL]
9366
9442
+
Arg
CCG
[ENA]
¡û
Identical group No.363957 (3 seq.)
>W141146842
AWWC01000009
Synergistota
Jonquetella sp. BV3C21 [AWWC]
20043
20119
+
Arg
CCG
[ENA]
¡û
>W09132977
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
74925
74849
-
Arg
CCG
[ENA]
¡û
>W121017503
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
371454
371378
-
Arg
CCG
[ENA]
¡û
Identical group No.374077 (1 seq.)
>W131157323
AQRZ01000038
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
11139
11063
-
Arg
CCG
[ENA]
¡û
Identical group No.430986 (1 seq.)
>W141278976
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
949219
949143
-
Arg
CCG
[ENA]
¡û
Identical group No.440562 (1 seq.)
>W1711744515
MUHX01000035
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
21489
21413
-
Arg
CCG
[ENA]
¡û
Identical group No.440914 (1 seq.)
>C121005680
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
773285
773361
+
Arg
CCG
[Ensembl]
¡û
Identical group No.642161 (1 seq.)
>W141279020
JAFZ01000002
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
63237
63162
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK