This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CCT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304068 (1 seq.)
>W1712039371
NFJQ01000007
Synergistota
Cloacibacillus sp. An23 [NFJQ]
144622
144698
+
Arg
CCT
[ENA]
¡û
Identical group No.307532 (6 seq.)
>W141701193
JMKI01000009
Synergistota
Synergistes jonesii [JMKI]
1177
1101
-
Arg
CCT
[ENA]
¡û
>W1710629236
JPZQ01000010
Synergistota
Synergistes jonesii [JPZQ]
286
210
-
Arg
CCT
[ENA]
¡û
>W1710629280
JPZR01000009
Synergistota
Synergistes jonesii [JPZR]
287
211
-
Arg
CCT
[ENA]
¡û
>W1710629322
JPZS01000008
Synergistota
Synergistes jonesii [JPZS]
286
210
-
Arg
CCT
[ENA]
¡û
>W1710631838
JQEK01000028
Synergistota
Synergistes jonesii [JQEK]
16020
16096
+
Arg
CCT
[ENA]
¡û
>W1710631870
JQEL01000009
Synergistota
Synergistes jonesii [JQEL]
286
210
-
Arg
CCT
[ENA]
¡û
Identical group No.352497 (1 seq.)
>W11138606
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
74646
74722
+
Arg
CCT
[ENA]
¡û
Identical group No.381606 (2 seq.)
>W1711137636
LVBQ01000140
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
6026
5950
-
Arg
CCT
[ENA]
¡û
>W1610948756
LVBQ01000140
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
6026
5950
-
Arg
CCT
[ENA]
¡û
Identical group No.402117 (1 seq.)
>W09126615
ACJX01000145
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
321
245
-
Arg
CCT
[ENA]
¡û
Identical group No.554137 (3 seq.)
>W141146874
AWWC01000028
Synergistota
Jonquetella sp. BV3C21 [AWWC]
48553
48478
-
Arg
CCT
[ENA]
¡û
>W09132962
ACOO02000018
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
28855
28930
+
Arg
CCT
[ENA]
¡û
>W121017486
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
189850
189925
+
Arg
CCT
[ENA]
¡û
Identical group No.642158 (1 seq.)
>W141278996
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1200954
1201029
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK