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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CGA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13634 (1 seq.)
>W1712039363
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
70319
70227
-
Ser
CGA
[ENA]
¡û
Identical group No.13753 (6 seq.)
>W141701216
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
84299
84207
-
Ser
CGA
[ENA]
¡û
>W1710629257
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
83468
83376
-
Ser
CGA
[ENA]
¡û
>W1710629307
JPZR01000047
Synergistota
Synergistes jonesii [JPZR]
792
700
-
Ser
CGA
[ENA]
¡û
>W1710629349
JPZS01000049
Synergistota
Synergistes jonesii [JPZS]
56607
56515
-
Ser
CGA
[ENA]
¡û
>W1710631826
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
83471
83379
-
Ser
CGA
[ENA]
¡û
>W1710631891
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
83468
83376
-
Ser
CGA
[ENA]
¡û
Identical group No.15541 (2 seq.)
>W11138594
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1243983
1244075
+
Ser
CGA
[ENA]
¡û
>W121031643
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
1092930
1092838
-
Ser
CGA
[ENA]
¡û
Identical group No.16802 (2 seq.)
>W09126638
ACJX01000213
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
98230
98138
-
Ser
CGA
[ENA]
¡û
>W1710530823
FNPD01000002
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
101290
101198
-
Ser
CGA
[ENA]
¡û
Identical group No.18935 (1 seq.)
>W141278974
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
977327
977235
-
Ser
CGA
[ENA]
¡û
Identical group No.58832 (3 seq.)
>W141146870
AWWC01000022
Synergistota
Jonquetella sp. BV3C21 [AWWC]
43548
43459
-
Ser
CGA
[ENA]
¡û
>W09132967
ACOO02000021
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
10535
10624
+
Ser
CGA
[ENA]
¡û
>W121017491
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
250138
250227
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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