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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CGT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.491405 (6 seq.)
>W141701218
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
83848
83773
-
Thr
CGT
[ENA]
¡û
>W1710629259
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
83017
82942
-
Thr
CGT
[ENA]
¡û
>W1710629309
JPZR01000047
Synergistota
Synergistes jonesii [JPZR]
341
266
-
Thr
CGT
[ENA]
¡û
>W1710629351
JPZS01000049
Synergistota
Synergistes jonesii [JPZS]
56156
56081
-
Thr
CGT
[ENA]
¡û
>W1710631828
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
83020
82945
-
Thr
CGT
[ENA]
¡û
>W1710631893
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
83017
82942
-
Thr
CGT
[ENA]
¡û
Identical group No.538074 (1 seq.)
>C161104019
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
186360
186435
+
Thr
CGT
-
¡û
Identical group No.539338 (3 seq.)
>W1711137563
LVBO01000193
Synergistota
Synergistales bacterium Syner_01 [LVBO]
10435
10510
+
Thr
CGT
[ENA]
¡û
>W1711629576
MPPC01000025
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
124304
124229
-
Thr
CGT
[ENA]
¡û
>W1610948683
LVBO01000193
Synergistota
Synergistales bacterium Syner_01 [LVBO]
10435
10510
+
Thr
CGT
[ENA]
¡û
Identical group No.541232 (1 seq.)
>W11300459
ADFP01000047
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
95607
95532
-
Thr
CGT
[ENA]
¡û
Identical group No.541391 (1 seq.)
>W11138592
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
971556
971631
+
Thr
CGT
[ENA]
¡û
Identical group No.553400 (3 seq.)
>W141146873
AWWC01000024
Synergistota
Jonquetella sp. BV3C21 [AWWC]
22150
22225
+
Thr
CGT
[ENA]
¡û
>W09132980
ACOO02000027
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
68264
68189
-
Thr
CGT
[ENA]
¡û
>W121017502
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
480850
480775
-
Thr
CGT
[ENA]
¡û
Identical group No.574072 (2 seq.)
>W1630018729
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
162
87
-
Thr
CGT
[ENA]
¡û
>W1730021960
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
162
87
-
Thr
CGT
[ENA]
¡û
Identical group No.603104 (2 seq.)
>W1711137596
LVBP01000232
Synergistota
Synergistales bacterium Syner_02 [LVBP]
261
336
+
Thr
CGT
[ENA]
¡û
>W1610948716
LVBP01000232
Synergistota
Synergistales bacterium Syner_02 [LVBP]
261
336
+
Thr
CGT
[ENA]
¡û
Identical group No.621923 (1 seq.)
>W09108902
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
248229
248154
-
Thr
CGT
[ENA]
¡û
Identical group No.628646 (1 seq.)
>W1710608699
FXBB01000014
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
30873
30948
+
Thr
CGT
[ENA]
¡û
Identical group No.629967 (1 seq.)
>W141278954
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
157116
157191
+
Thr
CGT
[ENA]
¡û
Identical group No.641275 (1 seq.)
>C121005678
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
579945
580020
+
Thr
CGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK