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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CGT
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.461197 (11 seq.)
>WENV180098789
MTBK01266929
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
310
235
-
Thr
CGT
[ENA]
¢þ
>WENV170678360
LDZT01014042
[LDZT] terrestrial metagenome; oil reservoir sample SB1
7958
8033
+
Thr
CGT
[ENA]
¢þ
>WENV170678637
LDZU01003517
[LDZU] terrestrial metagenome; oil reservoir sample SB2
223
298
+
Thr
CGT
[ENA]
¢þ
>WENV170967331
MTKW01000919
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2175
2100
-
Thr
CGT
[ENA]
¢þ
>WENV170972036
MTKX01018347
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
49273
49348
+
Thr
CGT
[ENA]
¢þ
>WENV170974574
MTKY01066083
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
13165
13240
+
Thr
CGT
[ENA]
¢þ
>WENV170976299
MTKZ01006422
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
54418
54343
-
Thr
CGT
[ENA]
¢þ
>W1610613712
LGGE01000035
Synergistota
Synergistales bacterium 57_84 [LGGE]
7958
8033
+
Thr
CGT
[ENA]
¡û
>W1610614175
LGGV01000142
Synergistota
Synergistales bacterium 58_81 [LGGV]
223
298
+
Thr
CGT
[ENA]
¡û
>W1710734865
LGGE01000035
Synergistota
Synergistales bacterium 57_84 [LGGE]
7958
8033
+
Thr
CGT
[ENA]
¡û
>W1710735258
LGGV01000142
Synergistota
Synergistales bacterium 58_81 [LGGV]
223
298
+
Thr
CGT
[ENA]
¡û
Identical group No.473783 (7 seq.)
>C171050564
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1856080
1856005
-
Thr
CGT
-
¡û
>WENV181614376
OGLV01054624
[OGLV] metagenome; Human gut stool
363
288
-
Thr
CGT
[ENA]
¢þ
>WENV181914364
OGYF01000160
[OGYF] human gut metagenome; faeces
68500
68575
+
Thr
CGT
[ENA]
¢þ
>WENV182031105
OHCS01002723
[OHCS] human gut metagenome; feces
1807
1882
+
Thr
CGT
[ENA]
¢þ
>WENV182180630
OHNO01004568
[OHNO] human gut metagenome; feces
116
191
+
Thr
CGT
[ENA]
¢þ
>WENV182212649
OHQG01002893
[OHQG] human gut metagenome; feces
2598
2673
+
Thr
CGT
[ENA]
¢þ
>WENV182215770
OHQM01002127
[OHQM] human gut metagenome; feces
1641
1716
+
Thr
CGT
[ENA]
¢þ
Identical group No.486067 (6 seq.)
>WENV170008249
AMZC01006003
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1757
1682
-
Thr
CGT
[ENA]
¢þ
>WENV170564066
CZCB01045918
[CZCB] anaerobic digester metagenome; anaerobic digester
76
1
-
Thr
CGT
[ENA]
¢þ
>W09126624
ACJX01000170
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
93445
93370
-
Thr
CGT
[ENA]
¡û
>C121008054
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
288441
288516
+
Thr
CGT
[Ensembl]
¡û
>W1710530844
FNPD01000010
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
576
651
+
Thr
CGT
[ENA]
¡û
>W1710594083
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
787494
787419
-
Thr
CGT
[ENA]
¡û
Identical group No.488004 (2 seq.)
>W1712039389
NFJQ01000011
Synergistota
Cloacibacillus sp. An23 [NFJQ]
31547
31472
-
Thr
CGT
[ENA]
¡û
>WENV181865673
OGWU01063803
[OGWU] human gut metagenome; faeces
134
209
+
Thr
CGT
[ENA]
¢þ
Identical group No.490526 (3 seq.)
>W141278989
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
673353
673428
+
Thr
CGT
[ENA]
¡û
>WENV170719907
LSQX01133135
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
61765
61690
-
Thr
CGT
[ENA]
¢þ
>C10100320
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1544015
1543940
-
Thr
CGT
[Ensembl]
¡û
Identical group No.491405 (6 seq.)
>W141701218
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
83848
83773
-
Thr
CGT
[ENA]
¡û
>W1710629259
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
83017
82942
-
Thr
CGT
[ENA]
¡û
>W1710629309
JPZR01000047
Synergistota
Synergistes jonesii [JPZR]
341
266
-
Thr
CGT
[ENA]
¡û
>W1710629351
JPZS01000049
Synergistota
Synergistes jonesii [JPZS]
56156
56081
-
Thr
CGT
[ENA]
¡û
>W1710631828
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
83020
82945
-
Thr
CGT
[ENA]
¡û
>W1710631893
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
83017
82942
-
Thr
CGT
[ENA]
¡û
Identical group No.500648 (7 seq.)
>WENV183516139
OMKS01135633
[OMKS] sediment metagenome; hot spring sediment
587
662
+
Thr
CGT
[ENA]
¢þ
>WENV170677167
LDZT01003279
[LDZT] terrestrial metagenome; oil reservoir sample SB1
10538
10613
+
Thr
CGT
[ENA]
¢þ
>WENV170679061
LDZU01006864
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1460
1535
+
Thr
CGT
[ENA]
¢þ
>W1610613628
LGGB01000031
Synergistota
Synergistales bacterium 53_16 [LGGB]
10538
10613
+
Thr
CGT
[ENA]
¡û
>W1610614508
LGHG01000115
Synergistota
Synergistales bacterium 54_9 [LGHG]
1460
1535
+
Thr
CGT
[ENA]
¡û
>W1710734800
LGGB01000031
Synergistota
Synergistales bacterium 53_16 [LGGB]
10538
10613
+
Thr
CGT
[ENA]
¡û
>W1710735489
LGHG01000115
Synergistota
Synergistales bacterium 54_9 [LGHG]
1460
1535
+
Thr
CGT
[ENA]
¡û
Identical group No.504037 (3 seq.)
>WENV170676917
LDZS01003199
[LDZS] terrestrial metagenome; oil reservoir sample K3
1286
1361
+
Thr
CGT
[ENA]
¢þ
>W1610613285
LGFQ01000019
Synergistota
Synergistales bacterium 54_24 [LGFQ]
1286
1361
+
Thr
CGT
[ENA]
¡û
>W1710734492
LGFQ01000019
Synergistota
Synergistales bacterium 54_24 [LGFQ]
1286
1361
+
Thr
CGT
[ENA]
¡û
Identical group No.517585 (6 seq.)
>WENV181908463
OGYB01000037
[OGYB] human gut metagenome; faeces
23237
23162
-
Thr
CGT
[ENA]
¢þ
>WENV182143918
OHKV01058219
[OHKV] human gut metagenome; feces
60
135
+
Thr
CGT
[ENA]
¢þ
>WENV182172628
OHMY01025191
[OHMY] human gut metagenome; feces
1050
975
-
Thr
CGT
[ENA]
¢þ
>WENV182537872
OIXH01022528
[OIXH] human gut metagenome; faeces
35
110
+
Thr
CGT
[ENA]
¢þ
>W141452050
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
451673
451598
-
Thr
CGT
[ENA]
¡û
>W121000501
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
69852
69777
-
Thr
CGT
[ENA]
¡û
Identical group No.538074 (1 seq.)
>C161104019
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
186360
186435
+
Thr
CGT
-
¡û
Identical group No.539338 (3 seq.)
>W1711137563
LVBO01000193
Synergistota
Synergistales bacterium Syner_01 [LVBO]
10435
10510
+
Thr
CGT
[ENA]
¡û
>W1711629576
MPPC01000025
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
124304
124229
-
Thr
CGT
[ENA]
¡û
>W1610948683
LVBO01000193
Synergistota
Synergistales bacterium Syner_01 [LVBO]
10435
10510
+
Thr
CGT
[ENA]
¡û
Identical group No.541232 (1 seq.)
>W11300459
ADFP01000047
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
95607
95532
-
Thr
CGT
[ENA]
¡û
Identical group No.541391 (1 seq.)
>W11138592
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
971556
971631
+
Thr
CGT
[ENA]
¡û
Identical group No.553400 (3 seq.)
>W141146873
AWWC01000024
Synergistota
Jonquetella sp. BV3C21 [AWWC]
22150
22225
+
Thr
CGT
[ENA]
¡û
>W09132980
ACOO02000027
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
68264
68189
-
Thr
CGT
[ENA]
¡û
>W121017502
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
480850
480775
-
Thr
CGT
[ENA]
¡û
Identical group No.574072 (2 seq.)
>W1630018729
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
162
87
-
Thr
CGT
[ENA]
¡û
>W1730021960
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
162
87
-
Thr
CGT
[ENA]
¡û
Identical group No.603104 (2 seq.)
>W1711137596
LVBP01000232
Synergistota
Synergistales bacterium Syner_02 [LVBP]
261
336
+
Thr
CGT
[ENA]
¡û
>W1610948716
LVBP01000232
Synergistota
Synergistales bacterium Syner_02 [LVBP]
261
336
+
Thr
CGT
[ENA]
¡û
Identical group No.614290 (4 seq.)
>WENV181409290
OGCI01000066
[OGCI] hot springs metagenome; Hot spring water
24699
24624
-
Thr
CGT
[ENA]
¢þ
>W09110123
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
230750
230825
+
Thr
CGT
[ENA]
¡û
>C10113007
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1353298
1353223
-
Thr
CGT
[Ensembl]
¡û
>W121031620
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
503349
503424
+
Thr
CGT
[ENA]
¡û
Identical group No.621923 (1 seq.)
>W09108902
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
248229
248154
-
Thr
CGT
[ENA]
¡û
Identical group No.628646 (1 seq.)
>W1710608699
FXBB01000014
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
30873
30948
+
Thr
CGT
[ENA]
¡û
Identical group No.629967 (1 seq.)
>W141278954
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
157116
157191
+
Thr
CGT
[ENA]
¡û
Identical group No.641275 (1 seq.)
>C121005678
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
579945
580020
+
Thr
CGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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