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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CTC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.491402 (6 seq.)
>W141701212
JMKI01000037
Synergistota
Synergistes jonesii [JMKI]
128369
128294
-
Glu
CTC
[ENA]
¡û
>W1710629254
JPZQ01000048
Synergistota
Synergistes jonesii [JPZQ]
29138
29063
-
Glu
CTC
[ENA]
¡û
>W1710629298
JPZR01000038
Synergistota
Synergistes jonesii [JPZR]
29146
29071
-
Glu
CTC
[ENA]
¡û
>W1710629340
JPZS01000041
Synergistota
Synergistes jonesii [JPZS]
29149
29074
-
Glu
CTC
[ENA]
¡û
>W1710631859
JQEK01000051
Synergistota
Synergistes jonesii [JQEK]
263
188
-
Glu
CTC
[ENA]
¡û
>W1710631888
JQEL01000043
Synergistota
Synergistes jonesii [JQEL]
29143
29068
-
Glu
CTC
[ENA]
¡û
Identical group No.541392 (1 seq.)
>W11138604
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
896198
896123
-
Glu
CTC
[ENA]
¡û
Identical group No.553416 (3 seq.)
>W141146846
AWWC01000012
Synergistota
Jonquetella sp. BV3C21 [AWWC]
72466
72541
+
Glu
CTC
[ENA]
¡û
>W09132944
ACOO02000001
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
94559
94634
+
Glu
CTC
[ENA]
¡û
>W121017511
AGRU01000004
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
623068
623143
+
Glu
CTC
[ENA]
¡û
Identical group No.565069 (1 seq.)
>W131157327
AQRZ01000041
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
5950
5875
-
Glu
CTC
[ENA]
¡û
Identical group No.574433 (1 seq.)
>W1710530818
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
126048
125973
-
Glu
CTC
[ENA]
¡û
Identical group No.629965 (1 seq.)
>W141278951
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
43549
43624
+
Glu
CTC
[ENA]
¡û
Identical group No.641277 (1 seq.)
>C121005693
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1455757
1455832
+
Glu
CTC
[Ensembl]
¡û
Identical group No.642160 (1 seq.)
>W141279015
JAFZ01000002
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
237697
237772
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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