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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.762361 (1 seq.)
>W141278950
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
43463
43537
+
Gln
CTG
[ENA]
¡û
Identical group No.806789 (3 seq.)
>W141146845
AWWC01000012
Synergistota
Jonquetella sp. BV3C21 [AWWC]
72391
72464
+
Gln
CTG
[ENA]
¡û
>W09132943
ACOO02000001
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
94484
94557
+
Gln
CTG
[ENA]
¡û
>W121017510
AGRU01000004
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
622993
623066
+
Gln
CTG
[ENA]
¡û
Identical group No.810114 (1 seq.)
>W131157326
AQRZ01000041
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
6040
5967
-
Gln
CTG
[ENA]
¡û
Identical group No.826630 (2 seq.)
>W09108904
ABTR01000002
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
116679
116752
+
Gln
CTG
[ENA]
¡û
>W1710608689
FXBB01000010
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
61654
61727
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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